MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:1095.8 nTPM
HPA:1095.8 nTPM
GTEx:751.8 nTPM
FANTOM5:948.5 Scaled Tags Per Million
Mouse:221.4 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 1095.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 1066.9
2828 Female, age 72, unknown 1091.5
2586 Male, age 75, left hemisphere 1089.9
2666 Male, age 74, left hemisphere 1087.0
2411 Female, age 72, unknown 1086.8
1870 Female, age 42, unknown 1079.1
2019 Male, age 18, unknown 1076.9
1830 Male, age 51, unknown 1058.4
1833 Male, age 53, unknown 1052.0
1827 Male, age 72, unknown 1031.3
2219 Male, age 76, both hemispheres 1016.5
Dorsal raphe nucleus
nTPM: 1070.4
2298 Female, age 72, unknown 1109.8
2016 Female, age 72, unknown 1076.4
2750 Male, age 76, both hemispheres 1075.7
1828 Male, age 53, unknown 1060.0
2047 Male, age 72, unknown 1029.9
Inferior colliculus
nTPM: 1045.4
1890 Male, age 53, unknown 1067.3
2097 Female, age 72, unknown 1059.3
1848 Female, age 42, unknown 1037.0
2849 Male, age 72, unknown 1018.2
Median raphe nucleus
nTPM: 1037.7
2220 Male, age 76, midline 1037.7
Pedunculopontine tegmental nucleus
nTPM: 1068.0
2338 Male, age 61, both hemispheres 1095.4
2334 Male, age 80, both hemispheres 1086.4
1921 Female, age 85, both hemispheres 1022.3
Periaquaductal grey, anterior
nTPM: 1076.8
2502 Female, age 75, unknown 1128.7
1795 Male, age 51, unknown 1059.1
1947 Male, age 18, unknown 1042.5
Periaquaductal grey, dorsal
nTPM: 1040.9
1840 Male, age 53, unknown 1061.2
1831 Male, age 72, unknown 1049.1
2464 Female, age 72, unknown 1034.5
2850 Male, age 76, both hemispheres 1018.9
Periaquaductal grey, lateral
nTPM: 1044.3
2053 Male, age 18, unknown 1058.5
2140 Male, age 76, both hemispheres 1041.3
2272 Male, age 74, both hemispheres 1033.3
Pretectal area
nTPM: 1043.0
2316 Male, age 76, right hemisphere 1080.7
2224 Female, age 72, unknown 1055.4
1817 Female, age 42, unknown 1049.9
1815 Male, age 53, unknown 1048.5
2007 Male, age 72, unknown 1048.3
2273 Male, age 74, both hemispheres 1047.3
2825 Male, age 18, unknown 1040.1
1816 Male, age 51, unknown 1034.5
1944 Female, age 72, unknown 1030.9
2407 Male, age 75, both hemispheres 1028.9
2667 Female, age 75, unknown 1008.9
Red nucleus
nTPM: 1093.9
2503 Female, age 72, unknown 1163.8
1904 Male, age 53, unknown 1108.7
2227 Male, age 72, unknown 1108.6
1865 Male, age 51, unknown 1106.5
2769 Male, age 72, unknown 1100.0
1821 Female, age 72, unknown 1098.9
2725 Female, age 75, unknown 1093.9
2785 Male, age 18, unknown 1086.5
2588 Male, age 74, left hemisphere 1075.9
1954 Female, age 42, unknown 1068.0
2584 Male, age 75, left hemisphere 1064.5
2823 Male, age 76, right hemisphere 1051.3
Substantia nigra
nTPM: 1095.8
1851 Male, age 51, unknown 1145.3
2699 Male, age 18, unknown 1141.2
2665 Male, age 74, both hemispheres 1123.8
2241 Male, age 72, unknown 1115.4
2409 Female, age 72, unknown 1112.4
1916 Female, age 42, unknown 1105.1
2590 Female, age 75, unknown 1086.5
1889 Female, age 72, unknown 1059.1
1941 Male, age 53, unknown 1036.4
2583 Male, age 75, right hemisphere 1032.9
Superior colliculus
nTPM: 1072.2
1995 Male, age 72, unknown 1132.3
2587 Male, age 74, left hemisphere 1122.1
1913 Female, age 42, unknown 1100.4
1796 Male, age 53, unknown 1076.6
2668 Female, age 75, unknown 1067.5
1839 Male, age 51, unknown 1051.8
2664 Male, age 75, both hemispheres 1051.1
2087 Female, age 72, unknown 1049.0
2261 Male, age 18, unknown 1045.0
1895 Male, age 76, right hemisphere 1026.1
Ventral tegmental area
nTPM: 1089.8
1915 Female, age 42, unknown 1141.0
2223 Female, age 72, unknown 1101.6
2021 Male, age 53, unknown 1094.4
1942 Male, age 51, unknown 1081.8
2410 Female, age 72, unknown 1079.9
2218 Male, age 76, both hemispheres 1040.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 751.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 751.8
Samples: 139

Max nTPM: 2828.3
Min nTPM: 266.1
Std nTPM: 329.7
Median nTPM: 683.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 2828.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2138.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1583.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1567.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 1405.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1287.2
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 1268.5
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 1235.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 1170.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 1162.9
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 1154.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 948.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 948.5
FF:10158-103A5 76 years, female 948.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 221.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 221.4
Samples: 4

Max nTPM: 275.3
Min nTPM: 195.9
Sample A Male 275.3
Sample B Male 195.9
Sample C Female 199.4
Sample D Female 214.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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