MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:36.8 nTPM
HPA:36.8 nTPM
GTEx:37.9 nTPM
FANTOM5:62.3 Scaled Tags Per Million
Pig:19.8 nTPM
Mouse:12.5 nTPM
Allen mouse:4.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 36.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 36.2
2586 Male, age 75, left hemisphere 54.3
2828 Female, age 72, unknown 44.1
2666 Male, age 74, left hemisphere 37.4
1827 Male, age 72, unknown 35.1
1870 Female, age 42, unknown 35.0
1833 Male, age 53, unknown 34.4
1830 Male, age 51, unknown 32.6
2019 Male, age 18, unknown 30.3
2219 Male, age 76, both hemispheres 30.3
2411 Female, age 72, unknown 28.7
Dorsal raphe nucleus
nTPM: 30.3
1828 Male, age 53, unknown 32.8
2016 Female, age 72, unknown 32.5
2047 Male, age 72, unknown 30.9
2750 Male, age 76, both hemispheres 28.3
2298 Female, age 72, unknown 27.1
Inferior colliculus
nTPM: 32.5
2849 Male, age 72, unknown 38.1
1848 Female, age 42, unknown 35.2
1890 Male, age 53, unknown 29.7
2097 Female, age 72, unknown 27.0
Median raphe nucleus
nTPM: 22.1
2220 Male, age 76, midline 22.1
Pedunculopontine tegmental nucleus
nTPM: 29.2
2338 Male, age 61, both hemispheres 30.2
2334 Male, age 80, both hemispheres 29.6
1921 Female, age 85, both hemispheres 27.9
Periaquaductal grey, anterior
nTPM: 34.4
1795 Male, age 51, unknown 36.4
2502 Female, age 75, unknown 35.5
1947 Male, age 18, unknown 31.2
Periaquaductal grey, dorsal
nTPM: 35.1
2850 Male, age 76, both hemispheres 36.1
1840 Male, age 53, unknown 36.0
1831 Male, age 72, unknown 34.3
2464 Female, age 72, unknown 33.8
Periaquaductal grey, lateral
nTPM: 32.9
2053 Male, age 18, unknown 37.5
2140 Male, age 76, both hemispheres 31.8
2272 Male, age 74, both hemispheres 29.4
Pretectal area
nTPM: 33.9
1817 Female, age 42, unknown 40.7
1944 Female, age 72, unknown 38.8
1815 Male, age 53, unknown 38.5
1816 Male, age 51, unknown 38.1
2407 Male, age 75, both hemispheres 37.2
2667 Female, age 75, unknown 35.0
2007 Male, age 72, unknown 34.7
2825 Male, age 18, unknown 34.2
2224 Female, age 72, unknown 27.8
2273 Male, age 74, both hemispheres 25.2
2316 Male, age 76, right hemisphere 22.5
Red nucleus
nTPM: 35.6
2588 Male, age 74, left hemisphere 41.1
2584 Male, age 75, left hemisphere 39.6
1954 Female, age 42, unknown 39.1
2503 Female, age 72, unknown 37.3
1904 Male, age 53, unknown 35.9
2227 Male, age 72, unknown 35.1
2769 Male, age 72, unknown 35.0
1865 Male, age 51, unknown 34.8
2823 Male, age 76, right hemisphere 34.4
2785 Male, age 18, unknown 32.8
1821 Female, age 72, unknown 32.2
2725 Female, age 75, unknown 30.1
Substantia nigra
nTPM: 33.8
2665 Male, age 74, both hemispheres 38.8
2699 Male, age 18, unknown 37.1
1916 Female, age 42, unknown 36.4
2590 Female, age 75, unknown 36.1
1889 Female, age 72, unknown 35.7
2583 Male, age 75, right hemisphere 35.0
1851 Male, age 51, unknown 32.5
1941 Male, age 53, unknown 29.5
2409 Female, age 72, unknown 29.4
2241 Male, age 72, unknown 27.8
Superior colliculus
nTPM: 36.8
2664 Male, age 75, both hemispheres 58.6
2261 Male, age 18, unknown 39.0
1995 Male, age 72, unknown 36.9
2087 Female, age 72, unknown 36.8
2668 Female, age 75, unknown 36.5
1796 Male, age 53, unknown 36.1
1839 Male, age 51, unknown 33.8
1913 Female, age 42, unknown 33.5
2587 Male, age 74, left hemisphere 30.6
1895 Male, age 76, right hemisphere 26.6
Ventral tegmental area
nTPM: 32.5
2223 Female, age 72, unknown 35.3
2410 Female, age 72, unknown 34.0
1942 Male, age 51, unknown 32.8
1915 Female, age 42, unknown 32.1
2021 Male, age 53, unknown 31.7
2218 Male, age 76, both hemispheres 28.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 37.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 37.9
Samples: 139

Max nTPM: 142.8
Min nTPM: 13.9
Std nTPM: 18.2
Median nTPM: 33.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 142.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 95.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 93.7
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 88.1
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 84.8
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 80.7
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 71.9
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 70.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 69.4
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 67.4
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 64.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 62.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 62.3
FF:10158-103A5 76 years, female 62.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 19.8
Pig sample Sample description nTPM
Midbrain
nTPM: 17.6
Samples: 4

Max nTPM: 22.7
Min nTPM: 14.6
Sample A Female 22.7
Sample B Female 14.6
Sample C Male 16.5
Sample D Male 16.5
Periaqueductal gray
nTPM: 17.5
Samples: 3

Max nTPM: 19.0
Min nTPM: 15.2
Sample B Female 15.2
Sample C Male 19.0
Sample D Male 18.3
Substantia nigra
nTPM: 19.8
Samples: 4

Max nTPM: 22.7
Min nTPM: 17.6
Sample A Female 18.8
Sample B Female 17.6
Sample C Male 19.9
Sample D Male 22.7
Superior colliculi
nTPM: 16.9
Samples: 4

Max nTPM: 17.7
Min nTPM: 16.2
Sample A Female 16.8
Sample B Female 16.9
Sample C Male 16.2
Sample D Male 17.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 12.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 12.5
Samples: 4

Max nTPM: 13.4
Min nTPM: 11.4
Sample A Male 13.4
Sample B Male 11.4
Sample C Female 13.0
Sample D Female 12.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.1
71656916 Antisense, RP_050927_04_E07, Mouse strain C57BL/6J (56 days, male) 4.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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