MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:3637.9 nTPM
HPA:3637.9 nTPM
GTEx:4012.0 nTPM
FANTOM5:387.6 Scaled Tags Per Million

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 3637.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 3575.5
1870 Female, age 42, unknown 3634.5
2219 Male, age 76, both hemispheres 3615.5
2666 Male, age 74, left hemisphere 3610.9
2586 Male, age 75, left hemisphere 3596.6
1833 Male, age 53, unknown 3584.8
2828 Female, age 72, unknown 3565.5
1830 Male, age 51, unknown 3549.3
2411 Female, age 72, unknown 3549.2
1827 Male, age 72, unknown 3527.9
2019 Male, age 18, unknown 3520.7
Dorsal raphe nucleus
nTPM: 3562.0
2016 Female, age 72, unknown 3581.5
2750 Male, age 76, both hemispheres 3571.8
1828 Male, age 53, unknown 3564.4
2298 Female, age 72, unknown 3555.8
2047 Male, age 72, unknown 3536.5
Inferior colliculus
nTPM: 3585.7
2849 Male, age 72, unknown 3634.7
1890 Male, age 53, unknown 3608.1
2097 Female, age 72, unknown 3550.4
1848 Female, age 42, unknown 3549.6
Median raphe nucleus
nTPM: 3601.3
2220 Male, age 76, midline 3601.3
Pedunculopontine tegmental nucleus
nTPM: 3621.2
2338 Male, age 61, both hemispheres 3668.1
2334 Male, age 80, both hemispheres 3631.8
1921 Female, age 85, both hemispheres 3563.8
Periaquaductal grey, anterior
nTPM: 3561.6
2502 Female, age 75, unknown 3585.5
1795 Male, age 51, unknown 3560.8
1947 Male, age 18, unknown 3538.4
Periaquaductal grey, dorsal
nTPM: 3590.0
2850 Male, age 76, both hemispheres 3654.7
1840 Male, age 53, unknown 3588.5
1831 Male, age 72, unknown 3574.4
2464 Female, age 72, unknown 3542.5
Periaquaductal grey, lateral
nTPM: 3555.1
2140 Male, age 76, both hemispheres 3580.9
2053 Male, age 18, unknown 3578.4
2272 Male, age 74, both hemispheres 3506.1
Pretectal area
nTPM: 3554.0
2825 Male, age 18, unknown 3583.9
2224 Female, age 72, unknown 3569.0
2407 Male, age 75, both hemispheres 3568.6
2667 Female, age 75, unknown 3568.2
1815 Male, age 53, unknown 3563.5
2316 Male, age 76, right hemisphere 3559.3
1817 Female, age 42, unknown 3557.0
1816 Male, age 51, unknown 3549.4
1944 Female, age 72, unknown 3546.0
2007 Male, age 72, unknown 3527.4
2273 Male, age 74, both hemispheres 3501.9
Red nucleus
nTPM: 3605.4
1865 Male, age 51, unknown 3659.1
2503 Female, age 72, unknown 3656.4
1904 Male, age 53, unknown 3635.8
2725 Female, age 75, unknown 3623.1
2769 Male, age 72, unknown 3613.5
2227 Male, age 72, unknown 3607.8
1821 Female, age 72, unknown 3594.1
1954 Female, age 42, unknown 3587.9
2823 Male, age 76, right hemisphere 3579.5
2785 Male, age 18, unknown 3576.1
2584 Male, age 75, left hemisphere 3575.8
2588 Male, age 74, left hemisphere 3555.5
Substantia nigra
nTPM: 3637.9
2699 Male, age 18, unknown 3814.6
2409 Female, age 72, unknown 3720.3
2241 Male, age 72, unknown 3690.3
1851 Male, age 51, unknown 3655.6
2665 Male, age 74, both hemispheres 3645.3
1916 Female, age 42, unknown 3622.2
1889 Female, age 72, unknown 3586.3
2590 Female, age 75, unknown 3557.2
2583 Male, age 75, right hemisphere 3546.4
1941 Male, age 53, unknown 3540.3
Superior colliculus
nTPM: 3577.8
1913 Female, age 42, unknown 3631.7
2587 Male, age 74, left hemisphere 3607.4
1995 Male, age 72, unknown 3599.9
1796 Male, age 53, unknown 3592.9
1895 Male, age 76, right hemisphere 3582.3
2668 Female, age 75, unknown 3575.1
2664 Male, age 75, both hemispheres 3561.8
1839 Male, age 51, unknown 3559.3
2087 Female, age 72, unknown 3537.5
2261 Male, age 18, unknown 3530.1
Ventral tegmental area
nTPM: 3606.6
1915 Female, age 42, unknown 3670.2
2223 Female, age 72, unknown 3626.3
2218 Male, age 76, both hemispheres 3600.8
2021 Male, age 53, unknown 3583.0
2410 Female, age 72, unknown 3579.6
1942 Male, age 51, unknown 3579.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 4012.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 4012.0
Samples: 139

Max nTPM: 15602.8
Min nTPM: 884.2
Std nTPM: 2096.0
Median nTPM: 3444.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 15602.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 12181.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 10190.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 9623.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 9382.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 8808.7
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 8061.5
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 7443.3
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 7436.0
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 7267.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 7231.6
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 387.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 387.6
FF:10158-103A5 76 years, female 387.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.