MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:95.6 nTPM
HPA:95.6 nTPM
GTEx:67.1 nTPM
FANTOM5:31.5 Scaled Tags Per Million
Pig:71.2 nTPM
Mouse:41.9 nTPM
Allen mouse:3.2 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 95.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 63.7
2828 Female, age 72, unknown 110.6
1827 Male, age 72, unknown 87.7
2666 Male, age 74, left hemisphere 80.8
2219 Male, age 76, both hemispheres 77.6
2586 Male, age 75, left hemisphere 57.3
2019 Male, age 18, unknown 50.7
1870 Female, age 42, unknown 47.0
1833 Male, age 53, unknown 43.4
1830 Male, age 51, unknown 41.6
2411 Female, age 72, unknown 40.1
Dorsal raphe nucleus
nTPM: 56.4
2016 Female, age 72, unknown 76.3
2298 Female, age 72, unknown 61.0
1828 Male, age 53, unknown 59.9
2047 Male, age 72, unknown 55.8
2750 Male, age 76, both hemispheres 28.7
Inferior colliculus
nTPM: 63.5
2849 Male, age 72, unknown 70.9
2097 Female, age 72, unknown 68.7
1890 Male, age 53, unknown 64.7
1848 Female, age 42, unknown 49.8
Median raphe nucleus
nTPM: 55.9
2220 Male, age 76, midline 55.9
Pedunculopontine tegmental nucleus
nTPM: 49.7
1921 Female, age 85, both hemispheres 60.5
2334 Male, age 80, both hemispheres 45.0
2338 Male, age 61, both hemispheres 43.6
Periaquaductal grey, anterior
nTPM: 81.5
1795 Male, age 51, unknown 87.9
2502 Female, age 75, unknown 84.6
1947 Male, age 18, unknown 72.1
Periaquaductal grey, dorsal
nTPM: 81.4
2850 Male, age 76, both hemispheres 97.1
1831 Male, age 72, unknown 85.0
1840 Male, age 53, unknown 81.0
2464 Female, age 72, unknown 62.6
Periaquaductal grey, lateral
nTPM: 86.9
2140 Male, age 76, both hemispheres 107.4
2053 Male, age 18, unknown 90.3
2272 Male, age 74, both hemispheres 62.9
Pretectal area
nTPM: 95.6
1944 Female, age 72, unknown 145.4
1816 Male, age 51, unknown 142.8
2273 Male, age 74, both hemispheres 101.0
2667 Female, age 75, unknown 97.9
1817 Female, age 42, unknown 94.2
1815 Male, age 53, unknown 85.3
2407 Male, age 75, both hemispheres 83.2
2007 Male, age 72, unknown 82.1
2224 Female, age 72, unknown 80.9
2316 Male, age 76, right hemisphere 72.6
2825 Male, age 18, unknown 66.1
Red nucleus
nTPM: 43.2
2725 Female, age 75, unknown 68.4
2785 Male, age 18, unknown 62.4
2503 Female, age 72, unknown 55.6
2588 Male, age 74, left hemisphere 52.7
2584 Male, age 75, left hemisphere 50.7
1865 Male, age 51, unknown 40.4
2227 Male, age 72, unknown 36.1
2769 Male, age 72, unknown 34.2
1904 Male, age 53, unknown 33.5
2823 Male, age 76, right hemisphere 32.1
1954 Female, age 42, unknown 30.6
1821 Female, age 72, unknown 21.1
Substantia nigra
nTPM: 71.1
1941 Male, age 53, unknown 91.9
1916 Female, age 42, unknown 81.6
2583 Male, age 75, right hemisphere 76.9
1889 Female, age 72, unknown 75.8
2409 Female, age 72, unknown 71.1
1851 Male, age 51, unknown 69.8
2590 Female, age 75, unknown 68.6
2699 Male, age 18, unknown 59.7
2241 Male, age 72, unknown 58.8
2665 Male, age 74, both hemispheres 57.1
Superior colliculus
nTPM: 78.2
2087 Female, age 72, unknown 123.0
2261 Male, age 18, unknown 112.9
1796 Male, age 53, unknown 96.5
1913 Female, age 42, unknown 90.1
2664 Male, age 75, both hemispheres 87.8
1995 Male, age 72, unknown 80.2
2587 Male, age 74, left hemisphere 63.1
1839 Male, age 51, unknown 54.1
2668 Female, age 75, unknown 44.8
1895 Male, age 76, right hemisphere 29.6
Ventral tegmental area
nTPM: 60.2
1915 Female, age 42, unknown 70.1
1942 Male, age 51, unknown 65.6
2218 Male, age 76, both hemispheres 59.4
2223 Female, age 72, unknown 58.7
2021 Male, age 53, unknown 55.5
2410 Female, age 72, unknown 52.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 67.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 67.1
Samples: 139

Max nTPM: 126.0
Min nTPM: 34.9
Std nTPM: 16.5
Median nTPM: 64.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 126.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 116.0
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 108.7
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 104.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 101.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 99.0
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 98.1
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 98.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 94.5
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 93.4
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 90.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 31.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 31.5
FF:10158-103A5 76 years, female 31.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 71.2
Pig sample Sample description nTPM
Midbrain
nTPM: 71.2
Samples: 4

Max nTPM: 83.6
Min nTPM: 57.7
Sample A Female 78.9
Sample B Female 57.7
Sample C Male 83.6
Sample D Male 64.7
Periaqueductal gray
nTPM: 54.5
Samples: 3

Max nTPM: 59.4
Min nTPM: 50.8
Sample B Female 59.4
Sample C Male 53.4
Sample D Male 50.8
Substantia nigra
nTPM: 61.5
Samples: 4

Max nTPM: 73.5
Min nTPM: 47.5
Sample A Female 61.7
Sample B Female 47.5
Sample C Male 63.4
Sample D Male 73.5
Superior colliculi
nTPM: 64.1
Samples: 4

Max nTPM: 76.5
Min nTPM: 50.5
Sample A Female 57.7
Sample B Female 50.5
Sample C Male 76.5
Sample D Male 71.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 41.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 41.9
Samples: 4

Max nTPM: 43.8
Min nTPM: 37.5
Sample A Male 37.5
Sample B Male 43.2
Sample C Female 43.8
Sample D Female 43.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.2
1994 Antisense, RP_Baylor_103380, Mouse strain C57BL/6J (56 days, male) 4.2
1995 Antisense, RP_Baylor_103380, Mouse strain C57BL/6J (56 days, male) 2.3
69012795 Antisense, RP_050309_01_E04, Mouse strain C57BL/6J (56 days, male) 2.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.