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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:173.3 nTPM
GTEx:173.3 nTPM
FANTOM5:14.6 Scaled Tags Per Million
Pig:39.3 nTPM
Mouse:59.5 nTPM

RETINA - Annotated protein expression
Pending normal tissue analysis

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 173.3
GTEx sample id Sample description nTPM
Retina
Average nTPM: 173.3
Samples: 105

Max nTPM: 281.6
Min nTPM: 108.0
Std nTPM: 39.4
Median nTPM:
415_1 77 years, female 281.6
414_1 84 years, female 260.0
229_1 69 years, female 255.6
307_1 66 years, female 254.2
126_1 63 years, male 251.0
389_1 86 years, female 246.1
495_1 57 years, female 244.1
162_1 79 years, female 238.3
266_1 85 years, male 235.1
324_1 76 years, male 233.6
425_1 59 years, female 232.5
246_1 77 years, male 230.1
142_1 61 years, female 228.7
480_1 63 years, male 224.3
490_1 67 years, female 222.0
376_1 75 years, female 220.1
468_1 89 years, male 218.3
293_1 68 years, female 217.2
499_1 55 years, female 211.3
172_1 72 years, female 210.1
218_1 71 years, female 205.9
526_1 61 years, male 204.0
518_1 75 years, female 201.7
217_1 76 years, male 201.5
149_1 88 years, male 198.5
466_1 57 years, female 196.3
384_1 83 years, male 194.7
119_1 70 years, female 194.6
321_1 62 years, female 193.9
292_1 71 years, male 192.8
375_1 74 years, female 192.3
447_1 81 years, male 189.3
347_1 72 years, male 188.6
153_1 70 years, female 188.1
237_1 82 years, male 187.7
355_1 70 years, female 185.6
251_1 78 years, male 185.5
335_1 73 years, female 184.3
137_1 83 years, male 184.0
139_1 64 years, female 183.4
9_1 66 years, female 183.2
313_1 79 years, female 181.9
2_1 77 years, female 180.8
115_1 83 years, male 180.3
286_1 68 years, female 176.5
491_1 89 years, female 175.5
316_1 62 years, male 175.0
43_1 64 years, female 174.2
413_1 59 years, female 172.2
117_1 61 years, male 171.5
311_1 78 years, male 171.3
315_1 62 years, female 170.8
243_1 75 years, male 170.4
81_1 67 years, male 169.5
352_1 62 years, male 168.3
404_1 82 years, female 168.1
35_1 74 years, female 167.6
89_1 63 years, male 167.1
32_1 67 years, male 165.6
503_1 68 years, male 165.6
394_1 75 years, female 163.3
318_1 68 years, male 162.9
163_1 78 years, male 161.8
379_1 60 years, male 161.2
177_1 74 years, male 158.0
17_1 71 years, male 156.8
377_1 82 years, female 156.4
18_1 88 years, male 155.2
6_1 73 years, female 155.1
353_1 82 years, female 154.9
386_1 76 years, male 152.2
291_1 76 years, male 151.9
265_1 87 years, male 150.0
322_1 76 years, male 146.9
319_1 81 years, male 146.8
405_1 91 years, male 146.7
99_1 64 years, male 145.7
396_1 62 years, male 141.3
42_1 85 years, male 140.7
254_1 77 years, female 140.0
354_1 81 years, female 138.8
145_1 84 years, male 137.3
189_1 76 years, male 135.6
350_1 84 years, female 135.6
517_1 88 years, male 134.9
356_1 87 years, female 133.1
317_1 60 years, male 132.1
406_1 79 years, male 130.9
314_1 67 years, male 130.3
120_1 70 years, female 129.2
349_1 83 years, male 128.6
288_1 66 years, female 127.4
348_1 84 years, male 127.3
501_1 88 years, male 126.2
264_1 73 years, female 123.1
109_1 81 years, female 123.0
173_1 67 years, male 120.9
41_1 94 years, female 117.6
308_1 70 years, female 116.8
320_1 89 years, female 116.2
295_1 61 years, female 115.6
351_1 91 years, male 115.4
452_1 88 years, female 110.0
4_1 88 years, female 108.1
506_1 65 years, male 108.0
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 14.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 14.6
FF:10030-101E3 24-65 years, mixed 14.6

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 39.3
Pig sample Sample description nTPM
Retina
nTPM: 39.3
Samples: 4

Max nTPM: 42.8
Min nTPM: 37.2
Sample A Female 37.2
Sample B Female 42.8
Sample C Male 37.9
Sample D Male 39.4

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 59.5
Mouse sample Sample description nTPM
Retina
nTPM: 59.6
Samples: 4

Max nTPM: 72.1
Min nTPM: 50.7
Sample A Male 52.9
Sample B Male 62.5
Sample C Female 50.7
Sample D Female 72.1

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by the Knut & Alice Wallenberg Foundation.