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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:154.1 nTPM
HPA:154.1 nTPM
GTEx:203.9 nTPM
FANTOM5:430.4 Scaled Tags Per Million
Pig:112.7 nTPM
Mouse:323.1 nTPM
Allen mouse:16.6 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 154.1
Sample id Sample description nTPM
Amygdala
nTPM: 146.6
2695 Female, age 67, right hemisphere 161.3
2814 Male, age 76, right hemisphere 152.0
1987 Female, age 91, left hemisphere 144.2
2517 Female, age 94, left hemisphere 139.1
2514 Male, age 75, right hemisphere 136.4
Basal amygdala
nTPM: 147.1
2609 Male, age 75, right hemisphere 172.2
2243 Female, age 91, right hemisphere 164.3
2685 Female, age 94, left hemisphere 156.9
1955 Male, age 76, both hemispheres 145.2
2110 Male, age 80, left hemisphere 136.9
2827 Female, age 67, right hemisphere 106.9
Central amygdala
nTPM: 154.1
2701 Female, age 91, right hemisphere 160.2
2515 Male, age 75, right hemisphere 158.4
2826 Female, age 94, left hemisphere 154.4
2239 Male, age 80, left hemisphere 150.4
1905 Male, age 76, both hemispheres 146.9
Corticomedial amygdala
nTPM: 142.1
2242 Female, age 91, right hemisphere 167.3
2829 Male, age 80, left hemisphere 155.9
2428 Male, age 75, right hemisphere 146.1
2240 Male, age 76, both hemispheres 135.3
2429 Female, age 94, left hemisphere 127.4
2535 Female, age 67, right hemisphere 120.9
Lateral amygdala
nTPM: 139.1
2255 Female, age 91, right hemisphere 150.1
1883 Male, age 76, both hemispheres 149.6
2516 Male, age 75, right hemisphere 149.3
2534 Female, age 94, left hemisphere 145.7
2256 Male, age 80, left hemisphere 136.4
2830 Female, age 67, right hemisphere 103.7
Stria terminalis, bed nucleus
nTPM: 136.0
1974 Female, age 91, both hemispheres 144.6
2201 Male, age 74, unknown 141.2
2486 Female, age 94, both hemispheres 122.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 203.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 203.9
Samples: 152

Max nTPM: 300.6
Min nTPM: 106.6
Std nTPM: 48.6
Median nTPM: 200.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 300.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 300.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 297.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 295.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 295.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 289.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 288.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 286.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 285.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 282.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 279.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 277.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 271.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 269.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 269.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 269.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 269.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 265.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 263.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 261.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 260.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 259.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 257.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 255.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 254.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 252.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 251.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 251.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 250.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 249.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 249.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 248.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 246.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 246.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 246.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 243.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 242.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 241.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 239.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 239.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 239.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 238.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 238.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 238.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 237.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 237.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 237.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 235.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 235.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 235.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 234.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 234.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 227.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 226.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 226.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 226.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 225.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 224.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 224.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 221.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 214.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 213.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 212.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 211.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 209.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 209.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 207.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 207.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 206.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 206.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 206.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 205.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 204.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 202.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 201.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 200.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 200.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 199.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 199.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 198.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 198.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 197.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 195.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 194.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 194.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 194.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 193.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 193.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 193.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 192.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 191.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 190.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 190.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 189.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 188.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 187.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 186.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 184.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 180.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 179.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 179.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 179.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 179.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 175.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 174.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 173.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 172.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 172.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 172.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 171.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 168.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 168.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 167.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 167.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 166.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 166.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 166.2
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 163.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 163.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 162.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 161.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 160.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 160.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 160.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 158.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 158.0
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 157.6
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 153.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 152.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 151.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 150.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 150.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 146.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 146.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 145.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 145.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 138.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 131.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 130.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 127.5
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 126.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 124.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 124.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 123.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 122.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 119.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 118.1
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 116.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 112.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 109.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 108.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 106.6
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 430.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 430.4
FF:10151-102I7 76 years, female 430.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 112.7
Pig sample Sample description nTPM
Amygdala
nTPM: 112.8
Samples: 4

Max nTPM: 171.9
Min nTPM: 75.9
Sample A Female 171.9
Sample B Female 75.9
Sample C Male 96.4
Sample D Male 106.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 323.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 323.2
Samples: 4

Max nTPM: 350.1
Min nTPM: 284.5
Sample A Male 335.5
Sample B Male 284.5
Sample C Female 350.1
Sample D Female 322.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 16.6
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 16.6
68162255 Antisense, RP_041122_02_E12, Mouse strain C57BL/6J (56 days, male) 31.1
1948 Antisense, RP_040507_01_F08, Mouse strain C57BL/6J (56 days, male) 2.0

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