MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:155.6 nTPM
HPA:155.6 nTPM
GTEx:222.2 nTPM
FANTOM5:251.7 Scaled Tags Per Million
Pig:136.3 nTPM
Mouse:249.1 nTPM
Allen mouse:11.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 155.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 147.1
2586 Male, age 75, left hemisphere 230.5
2828 Female, age 72, unknown 158.6
2019 Male, age 18, unknown 157.6
1827 Male, age 72, unknown 151.6
2666 Male, age 74, left hemisphere 137.0
1833 Male, age 53, unknown 136.9
1870 Female, age 42, unknown 130.9
2219 Male, age 76, both hemispheres 126.7
1830 Male, age 51, unknown 126.4
2411 Female, age 72, unknown 115.3
Dorsal raphe nucleus
nTPM: 140.0
2047 Male, age 72, unknown 155.8
2298 Female, age 72, unknown 146.1
1828 Male, age 53, unknown 144.1
2016 Female, age 72, unknown 127.8
2750 Male, age 76, both hemispheres 126.4
Inferior colliculus
nTPM: 147.0
2849 Male, age 72, unknown 162.9
1848 Female, age 42, unknown 144.7
2097 Female, age 72, unknown 140.3
1890 Male, age 53, unknown 140.2
Median raphe nucleus
nTPM: 155.6
2220 Male, age 76, midline 155.6
Pedunculopontine tegmental nucleus
nTPM: 134.5
2334 Male, age 80, both hemispheres 138.4
2338 Male, age 61, both hemispheres 133.3
1921 Female, age 85, both hemispheres 131.9
Periaquaductal grey, anterior
nTPM: 145.2
1795 Male, age 51, unknown 157.1
1947 Male, age 18, unknown 143.6
2502 Female, age 75, unknown 134.9
Periaquaductal grey, dorsal
nTPM: 142.5
2850 Male, age 76, both hemispheres 157.1
1840 Male, age 53, unknown 148.3
1831 Male, age 72, unknown 136.4
2464 Female, age 72, unknown 128.2
Periaquaductal grey, lateral
nTPM: 135.3
2140 Male, age 76, both hemispheres 142.0
2272 Male, age 74, both hemispheres 139.5
2053 Male, age 18, unknown 124.4
Pretectal area
nTPM: 154.3
1817 Female, age 42, unknown 182.0
1816 Male, age 51, unknown 173.4
1944 Female, age 72, unknown 166.5
2007 Male, age 72, unknown 166.2
2407 Male, age 75, both hemispheres 158.9
2667 Female, age 75, unknown 157.9
1815 Male, age 53, unknown 157.1
2273 Male, age 74, both hemispheres 148.6
2224 Female, age 72, unknown 137.7
2825 Male, age 18, unknown 137.3
2316 Male, age 76, right hemisphere 111.6
Red nucleus
nTPM: 135.6
2584 Male, age 75, left hemisphere 160.0
2785 Male, age 18, unknown 153.3
2725 Female, age 75, unknown 142.6
1821 Female, age 72, unknown 136.9
1954 Female, age 42, unknown 135.8
2769 Male, age 72, unknown 134.6
1865 Male, age 51, unknown 132.4
2503 Female, age 72, unknown 129.2
2227 Male, age 72, unknown 127.7
2823 Male, age 76, right hemisphere 126.3
1904 Male, age 53, unknown 126.1
2588 Male, age 74, left hemisphere 122.0
Substantia nigra
nTPM: 155.2
1916 Female, age 42, unknown 178.5
2583 Male, age 75, right hemisphere 177.1
2665 Male, age 74, both hemispheres 166.8
1941 Male, age 53, unknown 164.3
1889 Female, age 72, unknown 157.4
1851 Male, age 51, unknown 155.7
2699 Male, age 18, unknown 151.8
2590 Female, age 75, unknown 142.7
2409 Female, age 72, unknown 130.6
2241 Male, age 72, unknown 127.4
Superior colliculus
nTPM: 147.9
2664 Male, age 75, both hemispheres 201.1
1796 Male, age 53, unknown 156.7
2087 Female, age 72, unknown 156.1
2668 Female, age 75, unknown 155.1
2261 Male, age 18, unknown 145.3
1995 Male, age 72, unknown 138.1
1839 Male, age 51, unknown 137.5
2587 Male, age 74, left hemisphere 135.6
1913 Female, age 42, unknown 129.0
1895 Male, age 76, right hemisphere 124.1
Ventral tegmental area
nTPM: 140.5
1915 Female, age 42, unknown 148.9
2218 Male, age 76, both hemispheres 144.6
1942 Male, age 51, unknown 140.3
2410 Female, age 72, unknown 139.8
2223 Female, age 72, unknown 138.9
2021 Male, age 53, unknown 130.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 222.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 222.2
Samples: 139

Max nTPM: 626.9
Min nTPM: 77.2
Std nTPM: 80.6
Median nTPM: 211.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 626.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 474.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 464.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 430.6
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 414.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 397.6
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 390.4
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 369.1
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 367.7
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 346.1
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 343.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 251.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 251.7
FF:10158-103A5 76 years, female 251.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 136.3
Pig sample Sample description nTPM
Midbrain
nTPM: 117.3
Samples: 4

Max nTPM: 193.8
Min nTPM: 73.8
Sample A Female 73.8
Sample B Female 75.9
Sample C Male 193.8
Sample D Male 125.5
Periaqueductal gray
nTPM: 84.7
Samples: 3

Max nTPM: 112.3
Min nTPM: 67.4
Sample B Female 67.4
Sample C Male 112.3
Sample D Male 74.5
Substantia nigra
nTPM: 95.4
Samples: 4

Max nTPM: 128.6
Min nTPM: 50.9
Sample A Female 128.6
Sample B Female 75.5
Sample C Male 126.4
Sample D Male 50.9
Superior colliculi
nTPM: 136.3
Samples: 4

Max nTPM: 183.7
Min nTPM: 83.6
Sample A Female 145.3
Sample B Female 83.6
Sample C Male 183.7
Sample D Male 132.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 249.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 249.1
Samples: 4

Max nTPM: 263.8
Min nTPM: 240.3
Sample A Male 245.1
Sample B Male 240.3
Sample C Female 263.8
Sample D Female 247.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 11.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 11.6
68162255 Antisense, RP_041122_02_E12, Mouse strain C57BL/6J (56 days, male) 21.9
1948 Antisense, RP_040507_01_F08, Mouse strain C57BL/6J (56 days, male) 1.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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