MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:207.5 nTPM
HPA:207.5 nTPM
GTEx:285.6 nTPM
FANTOM5:139.0 Scaled Tags Per Million
Pig:130.5 nTPM
Mouse:484.9 nTPM
Allen mouse:10.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 207.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 182.1
2019 Male, age 18, unknown 215.0
1827 Male, age 72, unknown 184.4
2219 Male, age 76, both hemispheres 181.9
2828 Female, age 72, unknown 180.9
2586 Male, age 75, left hemisphere 180.4
1833 Male, age 53, unknown 179.3
1870 Female, age 42, unknown 178.1
2411 Female, age 72, unknown 177.9
1830 Male, age 51, unknown 171.8
2666 Male, age 74, left hemisphere 171.7
Dorsal raphe nucleus
nTPM: 184.8
1828 Male, age 53, unknown 201.2
2298 Female, age 72, unknown 190.1
2047 Male, age 72, unknown 187.1
2750 Male, age 76, both hemispheres 180.3
2016 Female, age 72, unknown 165.4
Inferior colliculus
nTPM: 186.8
1890 Male, age 53, unknown 196.8
2097 Female, age 72, unknown 191.0
1848 Female, age 42, unknown 187.8
2849 Male, age 72, unknown 171.6
Median raphe nucleus
nTPM: 179.2
2220 Male, age 76, midline 179.2
Pedunculopontine tegmental nucleus
nTPM: 182.8
2334 Male, age 80, both hemispheres 186.4
1921 Female, age 85, both hemispheres 186.1
2338 Male, age 61, both hemispheres 175.7
Periaquaductal grey, anterior
nTPM: 177.8
1947 Male, age 18, unknown 181.6
1795 Male, age 51, unknown 179.8
2502 Female, age 75, unknown 171.9
Periaquaductal grey, dorsal
nTPM: 168.4
1831 Male, age 72, unknown 174.2
2850 Male, age 76, both hemispheres 170.8
1840 Male, age 53, unknown 166.1
2464 Female, age 72, unknown 162.4
Periaquaductal grey, lateral
nTPM: 173.7
2272 Male, age 74, both hemispheres 190.4
2053 Male, age 18, unknown 167.0
2140 Male, age 76, both hemispheres 163.7
Pretectal area
nTPM: 200.1
1817 Female, age 42, unknown 231.0
2007 Male, age 72, unknown 230.8
1944 Female, age 72, unknown 226.6
1816 Male, age 51, unknown 219.3
2667 Female, age 75, unknown 213.7
1815 Male, age 53, unknown 201.2
2273 Male, age 74, both hemispheres 188.6
2224 Female, age 72, unknown 176.3
2407 Male, age 75, both hemispheres 173.8
2825 Male, age 18, unknown 170.3
2316 Male, age 76, right hemisphere 169.2
Red nucleus
nTPM: 196.4
1821 Female, age 72, unknown 223.0
2725 Female, age 75, unknown 208.7
2785 Male, age 18, unknown 208.5
1865 Male, age 51, unknown 196.6
2503 Female, age 72, unknown 194.8
2823 Male, age 76, right hemisphere 193.5
2769 Male, age 72, unknown 193.4
1954 Female, age 42, unknown 193.3
2588 Male, age 74, left hemisphere 191.3
2227 Male, age 72, unknown 189.4
1904 Male, age 53, unknown 185.1
2584 Male, age 75, left hemisphere 178.9
Substantia nigra
nTPM: 207.5
1916 Female, age 42, unknown 240.8
1889 Female, age 72, unknown 224.2
1941 Male, age 53, unknown 217.9
1851 Male, age 51, unknown 213.7
2409 Female, age 72, unknown 209.2
2241 Male, age 72, unknown 209.1
2665 Male, age 74, both hemispheres 194.4
2699 Male, age 18, unknown 193.6
2590 Female, age 75, unknown 191.0
2583 Male, age 75, right hemisphere 181.1
Superior colliculus
nTPM: 182.1
2087 Female, age 72, unknown 212.2
1895 Male, age 76, right hemisphere 197.8
2587 Male, age 74, left hemisphere 189.6
1796 Male, age 53, unknown 184.5
2261 Male, age 18, unknown 182.1
2668 Female, age 75, unknown 176.9
1839 Male, age 51, unknown 175.0
1913 Female, age 42, unknown 168.9
2664 Male, age 75, both hemispheres 167.9
1995 Male, age 72, unknown 166.2
Ventral tegmental area
nTPM: 190.2
2410 Female, age 72, unknown 207.5
1915 Female, age 42, unknown 203.9
2218 Male, age 76, both hemispheres 202.1
2223 Female, age 72, unknown 183.0
1942 Male, age 51, unknown 179.8
2021 Male, age 53, unknown 164.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 285.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 285.6
Samples: 139

Max nTPM: 564.8
Min nTPM: 135.9
Std nTPM: 81.8
Median nTPM: 272.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 564.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 505.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 504.1
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 491.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 487.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 459.6
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 445.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 444.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 430.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 422.4
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 417.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 139.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 139.0
FF:10158-103A5 76 years, female 139.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 130.5
Pig sample Sample description nTPM
Midbrain
nTPM: 106.6
Samples: 4

Max nTPM: 139.5
Min nTPM: 87.6
Sample A Female 89.6
Sample B Female 87.6
Sample C Male 139.5
Sample D Male 109.6
Periaqueductal gray
nTPM: 80.5
Samples: 3

Max nTPM: 98.9
Min nTPM: 66.8
Sample B Female 75.8
Sample C Male 98.9
Sample D Male 66.8
Substantia nigra
nTPM: 89.6
Samples: 4

Max nTPM: 137.5
Min nTPM: 59.9
Sample A Female 137.5
Sample B Female 62.6
Sample C Male 98.2
Sample D Male 59.9
Superior colliculi
nTPM: 130.5
Samples: 4

Max nTPM: 174.2
Min nTPM: 70.5
Sample A Female 164.2
Sample B Female 70.5
Sample C Male 174.2
Sample D Male 113.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 484.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 484.9
Samples: 4

Max nTPM: 502.9
Min nTPM: 462.2
Sample A Male 502.9
Sample B Male 487.1
Sample C Female 462.2
Sample D Female 487.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.7
70445676 Antisense, RP_050614_04_D01, Mouse strain C57BL/6J (56 days, male) 10.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.