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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:194.8 nTPM
HPA:194.8 nTPM
GTEx:200.3 nTPM
FANTOM5:176.3 Scaled Tags Per Million
Pig:110.9 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 194.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 194.8
2194 Female, age 79, both hemispheres 206.3
1981 Female, age 72, midline 204.9
2565 Male, age 75, midline 197.8
2048 Male, age 55, midline 183.9
2816 Male, age 47, midline 180.8
Cervical spinal cord, dorsal horn
nTPM: 190.4
2173 Female, age 72, unknown 211.7
2297 Male, age 75, both hemispheres 196.7
2069 Male, age 47, both hemispheres 187.1
2296 Male, age 66, both hemispheres 183.1
2721 Male, age 90, both hemispheres 182.6
1877 Male, age 55, unknown 181.4
Cervical spinal cord, ventral horn
nTPM: 189.1
2068 Male, age 55, unknown 198.0
2480 Male, age 75, both hemispheres 194.4
2820 Female, age 79, both hemispheres 193.7
2809 Male, age 90, both hemispheres 189.4
2295 Male, age 66, both hemispheres 180.8
2098 Female, age 72, unknown 178.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 200.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 200.3
Samples: 159

Max nTPM: 368.0
Min nTPM: 112.8
Std nTPM: 43.6
Median nTPM: 191.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 368.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 357.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 333.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 330.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 309.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 292.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 280.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 276.3
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 272.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 271.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 266.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 265.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 262.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 261.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 255.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 253.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 251.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 248.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 247.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 247.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 246.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 245.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 240.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 239.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 239.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 238.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 237.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 236.1
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 234.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 233.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 232.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 231.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 229.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 229.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 227.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 227.4
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 227.2
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 227.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 227.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 226.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 225.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 225.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 225.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 225.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 223.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 222.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 222.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 220.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 218.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 218.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 217.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 216.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 216.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 214.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 212.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 211.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 209.4
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 207.1
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 205.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 204.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 203.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 202.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 201.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 201.3
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 201.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 200.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 200.1
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 199.6
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 199.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 198.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 198.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 197.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 196.3
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 196.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 195.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 194.7
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 193.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 193.3
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 192.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 191.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 190.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 190.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 190.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 190.3
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 189.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 188.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 188.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 188.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 187.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 187.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 187.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 187.4
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 186.7
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 186.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 186.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 185.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 185.2
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 185.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 185.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 184.1
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 183.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 181.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 181.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 180.9
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 179.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 179.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 179.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 178.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 178.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 177.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 177.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 176.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 176.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 174.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 174.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 174.5
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 173.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 171.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 170.2
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 170.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 169.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 169.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 168.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 168.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 168.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 161.2
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 159.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 159.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 159.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 158.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 158.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 158.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 158.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 158.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 157.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 157.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 156.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 156.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 156.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 156.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 156.0
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 155.5
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 155.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 153.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 151.6
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 150.0
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 150.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 149.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 147.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 144.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 143.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 142.0
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 139.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 139.1
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 134.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 131.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 131.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 129.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 112.8
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 176.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 176.3
FF:10181-103D1 60 years, female 242.9
FF:10159-103A6 76 years, female 109.6

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 110.9
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 77.6
Samples: 4

Max nTPM: 91.0
Min nTPM: 64.9
Sample A Female 91.0
Sample B Female 64.9
Sample C Male 66.4
Sample D Male 88.0
Ventral spinal cord
nTPM: 110.9
Samples: 4

Max nTPM: 126.2
Min nTPM: 80.9
Sample A Female 121.5
Sample B Female 115.0
Sample C Male 126.2
Sample D Male 80.9

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