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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:98.8 nTPM
HPA:98.8 nTPM
GTEx:183.2 nTPM
FANTOM5:102.5 Scaled Tags Per Million
Pig:102.8 nTPM
Mouse:244.2 nTPM
Allen mouse:0.4 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 98.8
Sample id Sample description nTPM
Amygdala
nTPM: 98.8
2814 Male, age 76, right hemisphere 100.3
2517 Female, age 94, left hemisphere 99.5
2514 Male, age 75, right hemisphere 98.8
1987 Female, age 91, left hemisphere 98.4
2695 Female, age 67, right hemisphere 96.9
Basal amygdala
nTPM: 93.3
2609 Male, age 75, right hemisphere 96.2
2110 Male, age 80, left hemisphere 95.9
2243 Female, age 91, right hemisphere 93.9
2685 Female, age 94, left hemisphere 92.3
1955 Male, age 76, both hemispheres 91.4
2827 Female, age 67, right hemisphere 90.0
Central amygdala
nTPM: 96.3
1905 Male, age 76, both hemispheres 100.0
2826 Female, age 94, left hemisphere 99.8
2515 Male, age 75, right hemisphere 96.5
2239 Male, age 80, left hemisphere 94.1
2701 Female, age 91, right hemisphere 91.0
Corticomedial amygdala
nTPM: 95.4
2428 Male, age 75, right hemisphere 98.4
2829 Male, age 80, left hemisphere 97.2
2242 Female, age 91, right hemisphere 95.7
2240 Male, age 76, both hemispheres 94.6
2429 Female, age 94, left hemisphere 94.1
2535 Female, age 67, right hemisphere 92.2
Lateral amygdala
nTPM: 94.8
2516 Male, age 75, right hemisphere 102.1
1883 Male, age 76, both hemispheres 97.8
2534 Female, age 94, left hemisphere 94.4
2256 Male, age 80, left hemisphere 92.6
2830 Female, age 67, right hemisphere 91.4
2255 Female, age 91, right hemisphere 90.6
Stria terminalis, bed nucleus
nTPM: 96.0
1974 Female, age 91, both hemispheres 99.7
2486 Female, age 94, both hemispheres 95.5
2201 Male, age 74, unknown 92.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 183.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 183.2
Samples: 152

Max nTPM: 475.8
Min nTPM: 96.7
Std nTPM: 56.2
Median nTPM: 167.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 475.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 454.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 406.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 352.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 351.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 299.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 280.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 278.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 273.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 271.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 266.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 266.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 247.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 244.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 244.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 243.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 241.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 232.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 227.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 226.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 225.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 222.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 222.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 216.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 215.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 215.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 214.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 212.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 208.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 207.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 206.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 205.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 204.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 203.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 201.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 201.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 199.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 198.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 197.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 197.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 197.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 197.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 194.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 192.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 191.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 191.2
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 189.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 187.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 186.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 185.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 185.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 185.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 185.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 184.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 183.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 182.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 179.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 179.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 178.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 178.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 178.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 177.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 177.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 176.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 176.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 175.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 174.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 173.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 172.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 172.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 170.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 169.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 168.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 168.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 167.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 167.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 166.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 166.5
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 166.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 166.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 165.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 165.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 165.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 164.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 164.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 163.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 163.4
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 163.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 163.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 162.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 162.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 162.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 161.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 161.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 161.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 161.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 160.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 160.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 160.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 157.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 157.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 157.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 156.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 156.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 156.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 156.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 155.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 154.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 154.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 154.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 153.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 152.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 152.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 152.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 152.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 152.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 151.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 151.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 150.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 150.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 148.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 148.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 148.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 147.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 146.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 146.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 146.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 145.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 145.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 144.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 143.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 142.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 142.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 140.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 139.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 139.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 135.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 133.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 132.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 131.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 131.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 130.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 128.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 128.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 125.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 122.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 119.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 118.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 115.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 111.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 100.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 96.7
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 102.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 102.5
FF:10151-102I7 76 years, female 102.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 102.8
Pig sample Sample description nTPM
Amygdala
nTPM: 102.8
Samples: 4

Max nTPM: 137.2
Min nTPM: 73.1
Sample A Female 137.2
Sample B Female 108.2
Sample C Male 92.8
Sample D Male 73.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 244.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 244.2
Samples: 4

Max nTPM: 255.3
Min nTPM: 239.8
Sample A Male 240.6
Sample B Male 255.3
Sample C Female 241.2
Sample D Female 239.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.4
68910971 Antisense, RP_050118_02_H06, Mouse strain C57BL/6J (56 days, male) 0.4

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