MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:101.7 nTPM
HPA:101.7 nTPM
GTEx:198.9 nTPM
FANTOM5:111.5 Scaled Tags Per Million
Pig:161.2 nTPM
Mouse:219.5 nTPM
Allen mouse:1.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 101.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 96.6
2411 Female, age 72, unknown 103.1
2019 Male, age 18, unknown 101.7
1827 Male, age 72, unknown 100.6
2219 Male, age 76, both hemispheres 96.5
1870 Female, age 42, unknown 96.0
2828 Female, age 72, unknown 95.4
1833 Male, age 53, unknown 94.7
1830 Male, age 51, unknown 93.7
2586 Male, age 75, left hemisphere 92.9
2666 Male, age 74, left hemisphere 91.2
Dorsal raphe nucleus
nTPM: 98.4
2298 Female, age 72, unknown 103.5
2750 Male, age 76, both hemispheres 100.0
1828 Male, age 53, unknown 97.1
2047 Male, age 72, unknown 96.9
2016 Female, age 72, unknown 94.2
Inferior colliculus
nTPM: 96.0
2097 Female, age 72, unknown 100.2
1848 Female, age 42, unknown 96.3
1890 Male, age 53, unknown 95.7
2849 Male, age 72, unknown 91.8
Median raphe nucleus
nTPM: 96.6
2220 Male, age 76, midline 96.6
Pedunculopontine tegmental nucleus
nTPM: 98.7
2338 Male, age 61, both hemispheres 99.5
2334 Male, age 80, both hemispheres 98.8
1921 Female, age 85, both hemispheres 97.7
Periaquaductal grey, anterior
nTPM: 98.5
1795 Male, age 51, unknown 99.5
1947 Male, age 18, unknown 98.3
2502 Female, age 75, unknown 97.7
Periaquaductal grey, dorsal
nTPM: 93.9
1840 Male, age 53, unknown 95.3
2464 Female, age 72, unknown 95.2
1831 Male, age 72, unknown 92.6
2850 Male, age 76, both hemispheres 92.3
Periaquaductal grey, lateral
nTPM: 95.6
2272 Male, age 74, both hemispheres 102.4
2053 Male, age 18, unknown 92.6
2140 Male, age 76, both hemispheres 91.9
Pretectal area
nTPM: 98.9
1817 Female, age 42, unknown 103.4
2007 Male, age 72, unknown 103.2
1816 Male, age 51, unknown 101.7
2273 Male, age 74, both hemispheres 101.5
1815 Male, age 53, unknown 100.9
1944 Female, age 72, unknown 100.1
2667 Female, age 75, unknown 98.9
2316 Male, age 76, right hemisphere 97.2
2224 Female, age 72, unknown 95.9
2825 Male, age 18, unknown 93.8
2407 Male, age 75, both hemispheres 91.0
Red nucleus
nTPM: 97.7
1821 Female, age 72, unknown 102.2
2503 Female, age 72, unknown 101.2
2785 Male, age 18, unknown 101.1
2725 Female, age 75, unknown 100.0
1865 Male, age 51, unknown 97.9
2227 Male, age 72, unknown 97.3
1904 Male, age 53, unknown 97.0
2769 Male, age 72, unknown 97.0
2823 Male, age 76, right hemisphere 96.1
1954 Female, age 42, unknown 95.3
2588 Male, age 74, left hemisphere 94.5
2584 Male, age 75, left hemisphere 92.6
Substantia nigra
nTPM: 101.7
1916 Female, age 42, unknown 109.2
1851 Male, age 51, unknown 105.3
2241 Male, age 72, unknown 105.1
2665 Male, age 74, both hemispheres 101.6
1889 Female, age 72, unknown 101.2
2409 Female, age 72, unknown 101.2
2590 Female, age 75, unknown 101.2
1941 Male, age 53, unknown 101.1
2699 Male, age 18, unknown 98.8
2583 Male, age 75, right hemisphere 92.7
Superior colliculus
nTPM: 97.0
1796 Male, age 53, unknown 101.8
2087 Female, age 72, unknown 100.1
2587 Male, age 74, left hemisphere 100.0
2261 Male, age 18, unknown 99.1
1895 Male, age 76, right hemisphere 97.4
1839 Male, age 51, unknown 95.3
2668 Female, age 75, unknown 95.2
1913 Female, age 42, unknown 94.3
1995 Male, age 72, unknown 94.0
2664 Male, age 75, both hemispheres 92.8
Ventral tegmental area
nTPM: 99.0
1915 Female, age 42, unknown 103.4
2410 Female, age 72, unknown 102.6
2218 Male, age 76, both hemispheres 99.7
2223 Female, age 72, unknown 98.1
1942 Male, age 51, unknown 96.0
2021 Male, age 53, unknown 94.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 198.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 198.9
Samples: 139

Max nTPM: 431.6
Min nTPM: 120.6
Std nTPM: 41.1
Median nTPM: 191.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 431.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 323.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 310.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 309.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 308.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 285.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 283.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 273.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 265.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 265.1
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 253.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 111.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 111.5
FF:10158-103A5 76 years, female 111.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 161.2
Pig sample Sample description nTPM
Midbrain
nTPM: 159.2
Samples: 4

Max nTPM: 241.2
Min nTPM: 120.8
Sample A Female 241.2
Sample B Female 152.2
Sample C Male 122.7
Sample D Male 120.8
Periaqueductal gray
nTPM: 125.8
Samples: 3

Max nTPM: 131.4
Min nTPM: 115.0
Sample B Female 131.0
Sample C Male 131.4
Sample D Male 115.0
Substantia nigra
nTPM: 155.5
Samples: 4

Max nTPM: 205.9
Min nTPM: 123.3
Sample A Female 205.9
Sample B Female 148.8
Sample C Male 123.3
Sample D Male 144.0
Superior colliculi
nTPM: 161.2
Samples: 4

Max nTPM: 198.6
Min nTPM: 136.2
Sample A Female 198.6
Sample B Female 170.2
Sample C Male 136.2
Sample D Male 139.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 219.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 219.5
Samples: 4

Max nTPM: 238.3
Min nTPM: 203.3
Sample A Male 238.3
Sample B Male 208.5
Sample C Female 203.3
Sample D Female 227.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.4
68910971 Antisense, RP_050118_02_H06, Mouse strain C57BL/6J (56 days, male) 1.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.