MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:61.2 nTPM
HPA:61.2 nTPM
GTEx:81.7 nTPM
FANTOM5:18.8 Scaled Tags Per Million
Mouse:26.3 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 61.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 58.4
1827 Male, age 72, unknown 61.0
1870 Female, age 42, unknown 60.9
1833 Male, age 53, unknown 60.4
2828 Female, age 72, unknown 59.9
2586 Male, age 75, left hemisphere 58.5
1830 Male, age 51, unknown 57.6
2019 Male, age 18, unknown 57.4
2411 Female, age 72, unknown 57.4
2666 Male, age 74, left hemisphere 55.6
2219 Male, age 76, both hemispheres 55.2
Dorsal raphe nucleus
nTPM: 60.6
2298 Female, age 72, unknown 66.5
1828 Male, age 53, unknown 60.1
2016 Female, age 72, unknown 59.2
2047 Male, age 72, unknown 58.7
2750 Male, age 76, both hemispheres 58.3
Inferior colliculus
nTPM: 59.2
2097 Female, age 72, unknown 59.9
1848 Female, age 42, unknown 59.4
2849 Male, age 72, unknown 59.4
1890 Male, age 53, unknown 58.1
Median raphe nucleus
nTPM: 56.6
2220 Male, age 76, midline 56.6
Pedunculopontine tegmental nucleus
nTPM: 59.2
1921 Female, age 85, both hemispheres 59.8
2334 Male, age 80, both hemispheres 59.3
2338 Male, age 61, both hemispheres 58.4
Periaquaductal grey, anterior
nTPM: 60.3
1795 Male, age 51, unknown 61.0
1947 Male, age 18, unknown 60.4
2502 Female, age 75, unknown 59.4
Periaquaductal grey, dorsal
nTPM: 58.8
1831 Male, age 72, unknown 60.6
2850 Male, age 76, both hemispheres 60.5
1840 Male, age 53, unknown 57.2
2464 Female, age 72, unknown 56.9
Periaquaductal grey, lateral
nTPM: 58.9
2272 Male, age 74, both hemispheres 61.7
2053 Male, age 18, unknown 59.1
2140 Male, age 76, both hemispheres 56.0
Pretectal area
nTPM: 60.1
2273 Male, age 74, both hemispheres 63.3
1816 Male, age 51, unknown 63.0
2667 Female, age 75, unknown 62.0
2224 Female, age 72, unknown 61.8
2007 Male, age 72, unknown 61.1
1817 Female, age 42, unknown 60.2
2825 Male, age 18, unknown 59.9
1944 Female, age 72, unknown 58.6
1815 Male, age 53, unknown 57.3
2407 Male, age 75, both hemispheres 57.2
2316 Male, age 76, right hemisphere 56.7
Red nucleus
nTPM: 61.2
1821 Female, age 72, unknown 65.1
2503 Female, age 72, unknown 63.7
1954 Female, age 42, unknown 63.5
2725 Female, age 75, unknown 63.2
2769 Male, age 72, unknown 62.9
2227 Male, age 72, unknown 62.2
1904 Male, age 53, unknown 62.0
2785 Male, age 18, unknown 60.6
1865 Male, age 51, unknown 58.7
2823 Male, age 76, right hemisphere 58.4
2584 Male, age 75, left hemisphere 57.6
2588 Male, age 74, left hemisphere 56.0
Substantia nigra
nTPM: 57.5
2409 Female, age 72, unknown 60.5
1889 Female, age 72, unknown 60.0
2699 Male, age 18, unknown 60.0
1941 Male, age 53, unknown 59.0
1916 Female, age 42, unknown 58.9
1851 Male, age 51, unknown 57.3
2583 Male, age 75, right hemisphere 56.7
2665 Male, age 74, both hemispheres 55.7
2590 Female, age 75, unknown 55.0
2241 Male, age 72, unknown 51.4
Superior colliculus
nTPM: 59.8
1913 Female, age 42, unknown 61.9
1895 Male, age 76, right hemisphere 61.2
1796 Male, age 53, unknown 61.1
1839 Male, age 51, unknown 60.7
1995 Male, age 72, unknown 60.7
2587 Male, age 74, left hemisphere 59.8
2668 Female, age 75, unknown 59.4
2087 Female, age 72, unknown 58.4
2261 Male, age 18, unknown 57.8
2664 Male, age 75, both hemispheres 57.3
Ventral tegmental area
nTPM: 57.9
2410 Female, age 72, unknown 60.4
2218 Male, age 76, both hemispheres 58.7
1915 Female, age 42, unknown 58.4
2021 Male, age 53, unknown 57.4
1942 Male, age 51, unknown 56.4
2223 Female, age 72, unknown 55.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 81.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 81.7
Samples: 139

Max nTPM: 195.6
Min nTPM: 34.4
Std nTPM: 24.9
Median nTPM: 76.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 195.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 176.2
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 145.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 143.8
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 139.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 136.1
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 134.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 128.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 125.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 123.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 114.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 18.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 18.8
FF:10158-103A5 76 years, female 18.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 26.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 26.2
Samples: 4

Max nTPM: 43.4
Min nTPM: 15.7
Sample A Male 43.4
Sample B Male 22.5
Sample C Female 23.3
Sample D Female 15.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
68546107 Antisense, RP_050120_02_A03, Mouse strain C57BL/6J (56 days, male) 0.0

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