MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:230.1 nTPM
HPA:230.1 nTPM
GTEx:164.3 nTPM
FANTOM5:503.8 Scaled Tags Per Million
Pig:254.0 nTPM
Mouse:226.0 nTPM
Allen mouse:20.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 230.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 198.1
2019 Male, age 18, unknown 225.7
2411 Female, age 72, unknown 211.0
1870 Female, age 42, unknown 207.9
1833 Male, age 53, unknown 202.3
2828 Female, age 72, unknown 201.9
1827 Male, age 72, unknown 201.4
1830 Male, age 51, unknown 200.0
2666 Male, age 74, left hemisphere 185.3
2219 Male, age 76, both hemispheres 182.4
2586 Male, age 75, left hemisphere 163.1
Dorsal raphe nucleus
nTPM: 214.0
2298 Female, age 72, unknown 242.5
2016 Female, age 72, unknown 215.9
1828 Male, age 53, unknown 212.8
2750 Male, age 76, both hemispheres 207.8
2047 Male, age 72, unknown 190.8
Inferior colliculus
nTPM: 194.0
2097 Female, age 72, unknown 204.7
1848 Female, age 42, unknown 191.3
1890 Male, age 53, unknown 190.2
2849 Male, age 72, unknown 189.9
Median raphe nucleus
nTPM: 220.1
2220 Male, age 76, midline 220.1
Pedunculopontine tegmental nucleus
nTPM: 225.4
2338 Male, age 61, both hemispheres 254.3
2334 Male, age 80, both hemispheres 232.4
1921 Female, age 85, both hemispheres 189.5
Periaquaductal grey, anterior
nTPM: 213.1
2502 Female, age 75, unknown 215.2
1947 Male, age 18, unknown 213.8
1795 Male, age 51, unknown 210.4
Periaquaductal grey, dorsal
nTPM: 213.3
2850 Male, age 76, both hemispheres 259.6
1831 Male, age 72, unknown 200.8
2464 Female, age 72, unknown 197.3
1840 Male, age 53, unknown 195.3
Periaquaductal grey, lateral
nTPM: 230.1
2272 Male, age 74, both hemispheres 256.6
2140 Male, age 76, both hemispheres 239.3
2053 Male, age 18, unknown 194.5
Pretectal area
nTPM: 213.0
2273 Male, age 74, both hemispheres 265.6
1817 Female, age 42, unknown 223.0
1815 Male, age 53, unknown 218.7
2667 Female, age 75, unknown 216.9
2224 Female, age 72, unknown 215.6
2007 Male, age 72, unknown 211.5
1816 Male, age 51, unknown 203.8
1944 Female, age 72, unknown 200.6
2825 Male, age 18, unknown 199.0
2407 Male, age 75, both hemispheres 197.7
2316 Male, age 76, right hemisphere 190.2
Red nucleus
nTPM: 203.6
2725 Female, age 75, unknown 221.9
1904 Male, age 53, unknown 213.9
1954 Female, age 42, unknown 212.8
2785 Male, age 18, unknown 211.9
2503 Female, age 72, unknown 211.7
1821 Female, age 72, unknown 210.9
1865 Male, age 51, unknown 207.9
2227 Male, age 72, unknown 204.6
2769 Male, age 72, unknown 201.0
2823 Male, age 76, right hemisphere 189.2
2588 Male, age 74, left hemisphere 181.1
2584 Male, age 75, left hemisphere 176.3
Substantia nigra
nTPM: 195.8
1916 Female, age 42, unknown 217.7
1851 Male, age 51, unknown 204.6
1889 Female, age 72, unknown 204.5
2241 Male, age 72, unknown 203.2
1941 Male, age 53, unknown 201.1
2409 Female, age 72, unknown 192.7
2699 Male, age 18, unknown 189.5
2665 Male, age 74, both hemispheres 185.3
2590 Female, age 75, unknown 184.7
2583 Male, age 75, right hemisphere 174.7
Superior colliculus
nTPM: 198.7
1995 Male, age 72, unknown 221.6
1913 Female, age 42, unknown 214.1
2261 Male, age 18, unknown 210.3
2587 Male, age 74, left hemisphere 208.1
2087 Female, age 72, unknown 206.8
1796 Male, age 53, unknown 199.5
1839 Male, age 51, unknown 195.5
2668 Female, age 75, unknown 185.9
1895 Male, age 76, right hemisphere 179.2
2664 Male, age 75, both hemispheres 165.6
Ventral tegmental area
nTPM: 204.8
1915 Female, age 42, unknown 215.5
2223 Female, age 72, unknown 211.3
2218 Male, age 76, both hemispheres 207.0
2410 Female, age 72, unknown 203.5
1942 Male, age 51, unknown 198.3
2021 Male, age 53, unknown 193.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 164.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 164.3
Samples: 139

Max nTPM: 428.9
Min nTPM: 73.9
Std nTPM: 61.4
Median nTPM: 147.3
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 428.9
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 390.0
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 366.6
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 363.7
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 345.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 312.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 305.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 283.0
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 272.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 249.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 248.6
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 503.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 503.8
FF:10158-103A5 76 years, female 503.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 254.0
Pig sample Sample description nTPM
Midbrain
nTPM: 231.0
Samples: 4

Max nTPM: 310.8
Min nTPM: 185.3
Sample A Female 310.8
Sample B Female 185.3
Sample C Male 241.1
Sample D Male 186.6
Periaqueductal gray
nTPM: 197.5
Samples: 3

Max nTPM: 201.8
Min nTPM: 189.9
Sample B Female 189.9
Sample C Male 200.7
Sample D Male 201.8
Substantia nigra
nTPM: 216.6
Samples: 4

Max nTPM: 249.1
Min nTPM: 194.6
Sample A Female 249.1
Sample B Female 194.6
Sample C Male 203.8
Sample D Male 218.9
Superior colliculi
nTPM: 254.0
Samples: 4

Max nTPM: 290.7
Min nTPM: 226.1
Sample A Female 271.9
Sample B Female 290.7
Sample C Male 227.2
Sample D Male 226.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 226.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 226.0
Samples: 4

Max nTPM: 245.4
Min nTPM: 205.9
Sample A Male 205.9
Sample B Male 208.1
Sample C Female 245.4
Sample D Female 244.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 20.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 20.2
67978478 Antisense, RP_040923_01_C03, Mouse strain C57BL/6J (56 days, male) 20.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.