MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:11.6 nTPM
HPA:11.6 nTPM
GTEx:100.9 nTPM
FANTOM5:73.3 Scaled Tags Per Million
Pig:91.0 nTPM
Mouse:116.3 nTPM
Allen mouse:12.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 11.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 8.2
2219 Male, age 76, both hemispheres 18.2
2828 Female, age 72, unknown 13.4
2666 Male, age 74, left hemisphere 9.5
1870 Female, age 42, unknown 9.0
2019 Male, age 18, unknown 7.3
2411 Female, age 72, unknown 6.9
1830 Male, age 51, unknown 6.3
1833 Male, age 53, unknown 6.0
1827 Male, age 72, unknown 3.3
2586 Male, age 75, left hemisphere 1.7
Dorsal raphe nucleus
nTPM: 6.9
2750 Male, age 76, both hemispheres 12.0
2016 Female, age 72, unknown 10.3
1828 Male, age 53, unknown 6.4
2047 Male, age 72, unknown 3.2
2298 Female, age 72, unknown 2.8
Inferior colliculus
nTPM: 9.7
2849 Male, age 72, unknown 19.2
1890 Male, age 53, unknown 8.6
2097 Female, age 72, unknown 6.7
1848 Female, age 42, unknown 4.2
Median raphe nucleus
nTPM: 11.6
2220 Male, age 76, midline 11.6
Pedunculopontine tegmental nucleus
nTPM: 9.4
2334 Male, age 80, both hemispheres 13.7
2338 Male, age 61, both hemispheres 11.4
1921 Female, age 85, both hemispheres 3.0
Periaquaductal grey, anterior
nTPM: 4.9
1795 Male, age 51, unknown 5.8
2502 Female, age 75, unknown 5.7
1947 Male, age 18, unknown 3.2
Periaquaductal grey, dorsal
nTPM: 7.3
2850 Male, age 76, both hemispheres 20.3
1840 Male, age 53, unknown 4.2
1831 Male, age 72, unknown 2.9
2464 Female, age 72, unknown 1.8
Periaquaductal grey, lateral
nTPM: 4.9
2140 Male, age 76, both hemispheres 8.9
2272 Male, age 74, both hemispheres 5.9
2053 Male, age 18, unknown 0.0
Pretectal area
nTPM: 6.9
2224 Female, age 72, unknown 12.2
2825 Male, age 18, unknown 10.5
2273 Male, age 74, both hemispheres 9.0
2667 Female, age 75, unknown 7.9
2316 Male, age 76, right hemisphere 7.3
1815 Male, age 53, unknown 6.2
2407 Male, age 75, both hemispheres 6.0
2007 Male, age 72, unknown 5.2
1816 Male, age 51, unknown 4.9
1817 Female, age 42, unknown 4.0
1944 Female, age 72, unknown 2.2
Red nucleus
nTPM: 8.5
2227 Male, age 72, unknown 13.7
2769 Male, age 72, unknown 12.8
1865 Male, age 51, unknown 11.8
2725 Female, age 75, unknown 11.0
1904 Male, age 53, unknown 10.5
2503 Female, age 72, unknown 9.6
2785 Male, age 18, unknown 7.8
2588 Male, age 74, left hemisphere 6.5
1954 Female, age 42, unknown 6.2
1821 Female, age 72, unknown 5.3
2823 Male, age 76, right hemisphere 4.8
2584 Male, age 75, left hemisphere 2.4
Substantia nigra
nTPM: 6.5
2699 Male, age 18, unknown 13.7
2665 Male, age 74, both hemispheres 9.2
2409 Female, age 72, unknown 8.8
1941 Male, age 53, unknown 7.7
1916 Female, age 42, unknown 7.4
1851 Male, age 51, unknown 6.0
2241 Male, age 72, unknown 5.7
2583 Male, age 75, right hemisphere 2.9
2590 Female, age 75, unknown 2.2
1889 Female, age 72, unknown 1.5
Superior colliculus
nTPM: 5.4
1796 Male, age 53, unknown 6.7
2664 Male, age 75, both hemispheres 6.6
1913 Female, age 42, unknown 6.5
1839 Male, age 51, unknown 5.7
2261 Male, age 18, unknown 5.6
2668 Female, age 75, unknown 5.5
1995 Male, age 72, unknown 4.7
2087 Female, age 72, unknown 4.6
2587 Male, age 74, left hemisphere 4.1
1895 Male, age 76, right hemisphere 3.8
Ventral tegmental area
nTPM: 9.2
2218 Male, age 76, both hemispheres 15.6
2223 Female, age 72, unknown 10.5
2410 Female, age 72, unknown 9.0
1942 Male, age 51, unknown 7.1
2021 Male, age 53, unknown 7.1
1915 Female, age 42, unknown 5.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 100.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 100.9
Samples: 139

Max nTPM: 178.2
Min nTPM: 59.9
Std nTPM: 18.7
Median nTPM: 98.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 178.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 160.1
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 149.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 147.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 147.3
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 138.9
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 137.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 135.8
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 135.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 134.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 134.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 73.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 73.3
FF:10158-103A5 76 years, female 73.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 91.0
Pig sample Sample description nTPM
Midbrain
nTPM: 91.0
Samples: 4

Max nTPM: 144.5
Min nTPM: 65.6
Sample A Female 144.5
Sample B Female 81.3
Sample C Male 72.7
Sample D Male 65.6
Periaqueductal gray
nTPM: 72.0
Samples: 3

Max nTPM: 74.9
Min nTPM: 67.4
Sample B Female 73.8
Sample C Male 74.9
Sample D Male 67.4
Substantia nigra
nTPM: 81.6
Samples: 4

Max nTPM: 96.3
Min nTPM: 68.0
Sample A Female 96.3
Sample B Female 68.0
Sample C Male 76.7
Sample D Male 85.5
Superior colliculi
nTPM: 84.9
Samples: 4

Max nTPM: 99.9
Min nTPM: 79.0
Sample A Female 99.9
Sample B Female 79.0
Sample C Male 81.2
Sample D Male 79.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 116.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 116.4
Samples: 4

Max nTPM: 126.2
Min nTPM: 110.8
Sample A Male 126.2
Sample B Male 110.8
Sample C Female 111.6
Sample D Female 116.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 12.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.1
69202675 Antisense, RP_050324_04_B07, Mouse strain C57BL/6J (56 days, male) 12.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.