MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:59.1 nTPM
HPA:59.1 nTPM
GTEx:63.4 nTPM
FANTOM5:91.5 Scaled Tags Per Million
Pig:33.3 nTPM
Mouse:35.6 nTPM
Allen mouse:10.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 59.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 49.2
2411 Female, age 72, unknown 59.3
2019 Male, age 18, unknown 56.9
1830 Male, age 51, unknown 55.7
1833 Male, age 53, unknown 53.3
1870 Female, age 42, unknown 51.7
2828 Female, age 72, unknown 47.2
2219 Male, age 76, both hemispheres 46.2
2586 Male, age 75, left hemisphere 43.2
2666 Male, age 74, left hemisphere 39.7
1827 Male, age 72, unknown 39.1
Dorsal raphe nucleus
nTPM: 41.2
2750 Male, age 76, both hemispheres 63.7
2016 Female, age 72, unknown 40.5
1828 Male, age 53, unknown 39.1
2047 Male, age 72, unknown 32.4
2298 Female, age 72, unknown 30.6
Inferior colliculus
nTPM: 38.1
1890 Male, age 53, unknown 40.2
1848 Female, age 42, unknown 38.1
2849 Male, age 72, unknown 37.2
2097 Female, age 72, unknown 37.0
Median raphe nucleus
nTPM: 38.3
2220 Male, age 76, midline 38.3
Pedunculopontine tegmental nucleus
nTPM: 45.4
2334 Male, age 80, both hemispheres 48.2
1921 Female, age 85, both hemispheres 45.6
2338 Male, age 61, both hemispheres 42.3
Periaquaductal grey, anterior
nTPM: 33.7
1947 Male, age 18, unknown 34.2
2502 Female, age 75, unknown 33.5
1795 Male, age 51, unknown 33.4
Periaquaductal grey, dorsal
nTPM: 32.3
2464 Female, age 72, unknown 40.9
1831 Male, age 72, unknown 33.1
1840 Male, age 53, unknown 28.5
2850 Male, age 76, both hemispheres 26.9
Periaquaductal grey, lateral
nTPM: 34.4
2272 Male, age 74, both hemispheres 40.6
2053 Male, age 18, unknown 34.8
2140 Male, age 76, both hemispheres 27.7
Pretectal area
nTPM: 37.8
2316 Male, age 76, right hemisphere 47.4
1815 Male, age 53, unknown 44.1
1817 Female, age 42, unknown 41.7
2007 Male, age 72, unknown 41.7
2407 Male, age 75, both hemispheres 40.4
2273 Male, age 74, both hemispheres 38.0
2825 Male, age 18, unknown 36.7
2224 Female, age 72, unknown 34.0
1944 Female, age 72, unknown 32.1
2667 Female, age 75, unknown 30.2
1816 Male, age 51, unknown 30.0
Red nucleus
nTPM: 59.1
1904 Male, age 53, unknown 65.7
2785 Male, age 18, unknown 65.5
1865 Male, age 51, unknown 64.4
2823 Male, age 76, right hemisphere 63.4
2769 Male, age 72, unknown 61.9
2227 Male, age 72, unknown 60.6
1821 Female, age 72, unknown 59.9
2503 Female, age 72, unknown 59.7
2588 Male, age 74, left hemisphere 57.3
2725 Female, age 75, unknown 52.8
1954 Female, age 42, unknown 52.1
2584 Male, age 75, left hemisphere 45.3
Substantia nigra
nTPM: 39.8
2583 Male, age 75, right hemisphere 50.7
2590 Female, age 75, unknown 48.5
2409 Female, age 72, unknown 43.3
1851 Male, age 51, unknown 42.9
1889 Female, age 72, unknown 42.7
2241 Male, age 72, unknown 36.1
1941 Male, age 53, unknown 35.2
2699 Male, age 18, unknown 35.0
1916 Female, age 42, unknown 33.5
2665 Male, age 74, both hemispheres 30.5
Superior colliculus
nTPM: 44.5
1995 Male, age 72, unknown 57.6
1913 Female, age 42, unknown 57.5
2668 Female, age 75, unknown 49.2
1895 Male, age 76, right hemisphere 47.8
2587 Male, age 74, left hemisphere 47.8
1839 Male, age 51, unknown 44.5
1796 Male, age 53, unknown 40.2
2261 Male, age 18, unknown 36.6
2087 Female, age 72, unknown 32.7
2664 Male, age 75, both hemispheres 31.3
Ventral tegmental area
nTPM: 45.5
2223 Female, age 72, unknown 58.2
2410 Female, age 72, unknown 53.5
1942 Male, age 51, unknown 42.2
2218 Male, age 76, both hemispheres 40.8
2021 Male, age 53, unknown 40.3
1915 Female, age 42, unknown 38.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 63.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 63.4
Samples: 139

Max nTPM: 267.7
Min nTPM: 10.4
Std nTPM: 38.2
Median nTPM: 55.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 267.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 209.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 170.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 167.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 159.3
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 148.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 143.8
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 127.8
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 124.7
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 119.6
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 117.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 91.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 91.5
FF:10158-103A5 76 years, female 91.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 33.3
Pig sample Sample description nTPM
Midbrain
nTPM: 29.0
Samples: 4

Max nTPM: 36.9
Min nTPM: 21.3
Sample A Female 32.2
Sample B Female 36.9
Sample C Male 21.3
Sample D Male 25.5
Periaqueductal gray
nTPM: 27.1
Samples: 3

Max nTPM: 31.7
Min nTPM: 21.3
Sample B Female 31.7
Sample C Male 21.3
Sample D Male 28.2
Substantia nigra
nTPM: 33.3
Samples: 4

Max nTPM: 46.3
Min nTPM: 22.0
Sample A Female 38.6
Sample B Female 22.0
Sample C Male 26.1
Sample D Male 46.3
Superior colliculi
nTPM: 24.2
Samples: 4

Max nTPM: 32.3
Min nTPM: 11.4
Sample A Female 29.2
Sample B Female 11.4
Sample C Male 24.0
Sample D Male 32.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 35.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 35.6
Samples: 4

Max nTPM: 36.7
Min nTPM: 34.2
Sample A Male 35.7
Sample B Male 34.2
Sample C Female 36.7
Sample D Female 35.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.9
70565891 Antisense, RP_050628_01_F02, Mouse strain C57BL/6J (56 days, male) 10.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.