BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:40.5 nTPM
HPA:40.5 nTPM
GTEx:32.0 nTPM
FANTOM5:30.3 Scaled Tags Per Million
Pig:18.0 nTPM
Mouse:70.6 nTPM
Allen mouse:0.7 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 40.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 39.5
1854 Male, age 80, left hemisphere 49.2
2289 Male, age 61, right hemisphere 44.8
1857 Female, age 85, left hemisphere 43.2
2288 Male, age 75, left hemisphere 37.5
1781 Male, age 74, unknown 36.9
2846 Female, age 79, unknown 36.0
2481 Female, age 94, left hemisphere 35.1
2290 Female, age 72, unknown 33.6
Claustrum
nTPM: 34.9
2196 Female, age 79, unknown 38.6
2292 Female, age 85, both hemispheres 37.1
2491 Male, age 75, both hemispheres 35.9
1956 Male, age 74, unknown 35.7
2392 Female, age 94, both hemispheres 35.7
2568 Male, age 61, both hemispheres 35.1
2198 Male, age 80, both hemispheres 32.3
2284 Female, age 91, both hemispheres 32.3
2645 Female, age 72, unknown 31.2
Globus pallidus, externus
nTPM: 38.5
1996 Male, age 80, right hemisphere 43.9
2395 Male, age 75, both hemispheres 39.9
2567 Female, age 72, unknown 39.3
2646 Male, age 61, right hemisphere 35.6
2772 Female, age 79, unknown 33.8
Globus pallidus, internus
nTPM: 36.8
1818 Male, age 74, unknown 41.3
2037 Male, age 80, right hemisphere 40.4
2566 Female, age 72, unknown 40.3
2483 Female, age 94, right hemisphere 38.2
2287 Male, age 75, right hemisphere 33.6
2111 Female, age 85, right hemisphere 31.8
2778 Female, age 91, both hemispheres 31.7
Nucleus accumbens
nTPM: 40.5
1806 Female, age 85, left hemisphere 48.6
2824 Male, age 61, right hemisphere 48.0
1856 Female, age 91, right hemisphere 47.8
1783 Male, age 74, unknown 41.7
2286 Male, age 75, left hemisphere 39.1
2391 Female, age 94, left hemisphere 34.5
2732 Male, age 80, right hemisphere 33.3
2698 Female, age 72, unknown 31.1
Nucleus basalis of Meynert
nTPM: 40.3
2569 Male, age 61, both hemispheres 46.7
2484 Female, age 94, left hemisphere 40.6
2393 Male, age 80, right hemisphere 39.6
2821 Male, age 75, both hemispheres 34.2
Nucleus of the diagonal band
nTPM: 34.6
2029 Male, age 61, right hemisphere 36.5
1812 Female, age 91, both hemispheres 36.4
2195 Female, age 85, both hemispheres 34.1
2775 Male, age 80, right hemisphere 33.2
1979 Male, age 74, unknown 33.1
Olfactory tubercle
nTPM: 36.0
1998 Female, age 91, both hemispheres 39.7
1846 Male, age 80, right hemisphere 37.4
2487 Female, age 94, left hemisphere 35.2
2856 Male, age 75, right hemisphere 31.5
Putamen
nTPM: 40.4
1838 Male, age 80, right hemisphere 49.9
1937 Female, age 91, right hemisphere 45.8
2647 Male, age 75, left hemisphere 40.7
2482 Female, age 94, left hemisphere 39.6
2466 Female, age 79, unknown 38.3
2489 Female, age 72, unknown 38.3
1829 Male, age 74, unknown 30.1
Septal nuclei
nTPM: 32.8
2009 Female, age 91, both hemispheres 37.3
2199 Male, age 80, right hemisphere 35.2
2394 Male, age 61, left hemisphere 34.0
2031 Female, age 72, unknown 32.9
2629 Female, age 94, right hemisphere 30.9
1960 Male, age 74, unknown 29.8
2059 Female, age 85, both hemispheres 29.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 32.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 29.4
Samples: 246

Max nTPM: 47.7
Min nTPM: 18.5
Std nTPM: 5.2
Median nTPM: 28.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 47.7
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 47.6
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 45.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 45.0
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 43.3
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 43.1
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 42.0
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 41.6
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 41.2
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 40.8
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 40.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 32.0
Samples: 246

Max nTPM: 51.3
Min nTPM: 20.7
Std nTPM: 5.1
Median nTPM: 31.7
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 51.3
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 49.0
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 46.6
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 45.5
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 45.5
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 44.3
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 44.0
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 42.4
GTEX-1H1ZS-0011-R6b-SM-A9G1F 70-79 years, male 42.0
GTEX-T2IS-0011-R6A-SM-32QP2 20-29 years, female 41.3
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 40.9
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Brain - Putamen (basal ganglia)
Average nTPM: 31.5
Samples: 205

Max nTPM: 53.2
Min nTPM: 19.7
Std nTPM: 5.5
Median nTPM: 30.1
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 53.2
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 52.2
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 47.5
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 45.1
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 44.8
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 44.5
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 43.0
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 43.0
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 42.6
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 42.5
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 42.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 30.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 24.4
FF:10164-103B2 76 years, female 24.4
Globus pallidus
Scaled Tags Per Million: 22.4
FF:10161-103A8 76 years, female 24.3
FF:10175-103C4 60 years, female 20.5
Nucleus accumbens
Scaled Tags Per Million: 30.3
FF:10037-101F1 23-56 years, mixed 30.3
Putamen
Scaled Tags Per Million: 26.7
FF:10176-103C5 60 years, female 26.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 18.0
Pig sample Sample description nTPM
Caudate
nTPM: 14.0
Samples: 4

Max nTPM: 14.4
Min nTPM: 12.9
Sample A Female 14.4
Sample B Female 14.4
Sample C Male 14.1
Sample D Male 12.9
Putamen
nTPM: 15.2
Samples: 4

Max nTPM: 18.0
Min nTPM: 12.5
Sample A Female 17.5
Sample B Female 12.7
Sample C Male 18.0
Sample D Male 12.5
Septum
nTPM: 18.0
Samples: 4

Max nTPM: 20.4
Min nTPM: 15.7
Sample A Female 17.8
Sample B Female 15.7
Sample C Male 17.9
Sample D Male 20.4
Ventral pallidum
nTPM: 16.0
Samples: 4

Max nTPM: 18.9
Min nTPM: 13.7
Sample A Female 14.7
Sample B Female 16.6
Sample C Male 18.9
Sample D Male 13.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 70.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 66.3
Samples: 4

Max nTPM: 68.9
Min nTPM: 63.0
Sample A Male 68.9
Sample B Male 66.3
Sample C Female 63.0
Sample D Female 67.0
Septum
nTPM: 70.6
Samples: 4

Max nTPM: 75.4
Min nTPM: 59.4
Sample A Male 72.5
Sample B Male 75.1
Sample C Female 75.4
Sample D Female 59.4
Ventral forebrain
nTPM: 70.2
Samples: 4

Max nTPM: 75.3
Min nTPM: 66.8
Sample A Male 66.8
Sample B Male 70.1
Sample C Female 68.7
Sample D Female 75.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.7
69817300 Antisense, RP_050510_03_A11, Mouse strain C57BL/6J (56 days, male) 0.7
Pallidum
Expression energy: 0.7
69817300 Antisense, RP_050510_03_A11, Mouse strain C57BL/6J (56 days, male) 0.7

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The Human Protein Atlas

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