MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:107.4 nTPM
HPA:107.4 nTPM
GTEx:93.7 nTPM
FANTOM5:61.3 Scaled Tags Per Million
Pig:98.6 nTPM
Mouse:302.3 nTPM
Allen mouse:10.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 107.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 87.5
2586 Male, age 75, left hemisphere 123.1
1827 Male, age 72, unknown 95.5
2828 Female, age 72, unknown 89.0
2219 Male, age 76, both hemispheres 85.8
1833 Male, age 53, unknown 85.4
2666 Male, age 74, left hemisphere 82.0
1870 Female, age 42, unknown 81.5
2019 Male, age 18, unknown 80.5
2411 Female, age 72, unknown 79.2
1830 Male, age 51, unknown 72.9
Dorsal raphe nucleus
nTPM: 101.6
2298 Female, age 72, unknown 120.9
2047 Male, age 72, unknown 109.8
2016 Female, age 72, unknown 101.4
1828 Male, age 53, unknown 93.7
2750 Male, age 76, both hemispheres 82.1
Inferior colliculus
nTPM: 107.4
1848 Female, age 42, unknown 117.8
2849 Male, age 72, unknown 105.1
1890 Male, age 53, unknown 104.3
2097 Female, age 72, unknown 102.4
Median raphe nucleus
nTPM: 99.3
2220 Male, age 76, midline 99.3
Pedunculopontine tegmental nucleus
nTPM: 74.7
1921 Female, age 85, both hemispheres 93.2
2334 Male, age 80, both hemispheres 80.5
2338 Male, age 61, both hemispheres 50.5
Periaquaductal grey, anterior
nTPM: 104.9
2502 Female, age 75, unknown 107.9
1947 Male, age 18, unknown 103.6
1795 Male, age 51, unknown 103.1
Periaquaductal grey, dorsal
nTPM: 102.0
1840 Male, age 53, unknown 131.0
2464 Female, age 72, unknown 96.3
2850 Male, age 76, both hemispheres 95.8
1831 Male, age 72, unknown 84.8
Periaquaductal grey, lateral
nTPM: 94.4
2053 Male, age 18, unknown 98.8
2272 Male, age 74, both hemispheres 96.5
2140 Male, age 76, both hemispheres 87.9
Pretectal area
nTPM: 101.4
1816 Male, age 51, unknown 126.5
1944 Female, age 72, unknown 115.2
2667 Female, age 75, unknown 114.5
2224 Female, age 72, unknown 102.9
1817 Female, age 42, unknown 102.1
2007 Male, age 72, unknown 98.5
1815 Male, age 53, unknown 97.2
2273 Male, age 74, both hemispheres 97.2
2825 Male, age 18, unknown 94.9
2407 Male, age 75, both hemispheres 87.0
2316 Male, age 76, right hemisphere 79.8
Red nucleus
nTPM: 83.2
1821 Female, age 72, unknown 94.0
2769 Male, age 72, unknown 91.3
2588 Male, age 74, left hemisphere 90.1
2227 Male, age 72, unknown 89.4
1954 Female, age 42, unknown 86.1
1904 Male, age 53, unknown 85.4
2503 Female, age 72, unknown 85.2
2785 Male, age 18, unknown 82.3
2823 Male, age 76, right hemisphere 78.2
1865 Male, age 51, unknown 74.4
2584 Male, age 75, left hemisphere 74.0
2725 Female, age 75, unknown 67.4
Substantia nigra
nTPM: 99.5
2665 Male, age 74, both hemispheres 122.8
1916 Female, age 42, unknown 112.3
1851 Male, age 51, unknown 105.0
1889 Female, age 72, unknown 104.3
2241 Male, age 72, unknown 103.7
2699 Male, age 18, unknown 100.6
2590 Female, age 75, unknown 96.2
2583 Male, age 75, right hemisphere 93.4
2409 Female, age 72, unknown 82.9
1941 Male, age 53, unknown 73.9
Superior colliculus
nTPM: 101.5
2664 Male, age 75, both hemispheres 128.8
2087 Female, age 72, unknown 115.9
2668 Female, age 75, unknown 108.6
2261 Male, age 18, unknown 108.3
1796 Male, age 53, unknown 106.7
2587 Male, age 74, left hemisphere 100.8
1895 Male, age 76, right hemisphere 96.8
1839 Male, age 51, unknown 95.2
1995 Male, age 72, unknown 81.2
1913 Female, age 42, unknown 72.1
Ventral tegmental area
nTPM: 97.1
1915 Female, age 42, unknown 110.8
2021 Male, age 53, unknown 104.6
1942 Male, age 51, unknown 102.8
2410 Female, age 72, unknown 94.7
2218 Male, age 76, both hemispheres 93.9
2223 Female, age 72, unknown 76.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 93.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 93.7
Samples: 139

Max nTPM: 178.4
Min nTPM: 26.1
Std nTPM: 28.3
Median nTPM: 94.9
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 178.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 165.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 161.8
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 147.0
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 146.1
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 145.2
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 143.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 142.1
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 141.4
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 136.6
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 135.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 61.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 61.3
FF:10158-103A5 76 years, female 61.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 98.6
Pig sample Sample description nTPM
Midbrain
nTPM: 92.7
Samples: 4

Max nTPM: 113.3
Min nTPM: 45.4
Sample A Female 45.4
Sample B Female 106.8
Sample C Male 105.3
Sample D Male 113.3
Periaqueductal gray
nTPM: 98.2
Samples: 3

Max nTPM: 115.2
Min nTPM: 76.3
Sample B Female 115.2
Sample C Male 103.0
Sample D Male 76.3
Substantia nigra
nTPM: 98.6
Samples: 4

Max nTPM: 128.9
Min nTPM: 74.2
Sample A Female 111.5
Sample B Female 79.8
Sample C Male 128.9
Sample D Male 74.2
Superior colliculi
nTPM: 88.2
Samples: 4

Max nTPM: 112.1
Min nTPM: 45.3
Sample A Female 110.1
Sample B Female 45.3
Sample C Male 85.3
Sample D Male 112.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 302.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 302.3
Samples: 4

Max nTPM: 307.1
Min nTPM: 293.3
Sample A Male 293.3
Sample B Male 307.1
Sample C Female 303.0
Sample D Female 305.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.6
72079931 Antisense, RP_051017_03_B07, Mouse strain C57BL/6J (56 days, male) 12.4
68918934 Antisense, RP_050301_02_C02, Mouse strain C57BL/6J (56 days, male) 8.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.