BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:6.5 nTPM
HPA:6.5 nTPM
GTEx:44.0 nTPM
FANTOM5:39.8 Scaled Tags Per Million

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 6.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 5.7
1781 Male, age 74, unknown 6.9
1854 Male, age 80, left hemisphere 6.1
2289 Male, age 61, right hemisphere 6.0
2481 Female, age 94, left hemisphere 5.9
2288 Male, age 75, left hemisphere 5.4
2290 Female, age 72, unknown 5.2
2846 Female, age 79, unknown 5.0
1857 Female, age 85, left hemisphere 4.8
Claustrum
nTPM: 6.1
2568 Male, age 61, both hemispheres 6.8
2491 Male, age 75, both hemispheres 6.6
2645 Female, age 72, unknown 6.6
2284 Female, age 91, both hemispheres 6.3
2392 Female, age 94, both hemispheres 6.1
2198 Male, age 80, both hemispheres 5.8
2196 Female, age 79, unknown 5.7
2292 Female, age 85, both hemispheres 5.5
1956 Male, age 74, unknown 5.2
Globus pallidus, externus
nTPM: 5.7
2646 Male, age 61, right hemisphere 6.2
2567 Female, age 72, unknown 6.0
1996 Male, age 80, right hemisphere 5.9
2772 Female, age 79, unknown 5.3
2395 Male, age 75, both hemispheres 4.8
Globus pallidus, internus
nTPM: 5.7
1818 Male, age 74, unknown 6.2
2037 Male, age 80, right hemisphere 6.2
2111 Female, age 85, right hemisphere 6.0
2483 Female, age 94, right hemisphere 5.8
2778 Female, age 91, both hemispheres 5.6
2566 Female, age 72, unknown 5.3
2287 Male, age 75, right hemisphere 5.0
Nucleus accumbens
nTPM: 5.7
2824 Male, age 61, right hemisphere 7.0
2286 Male, age 75, left hemisphere 6.2
2732 Male, age 80, right hemisphere 6.2
1783 Male, age 74, unknown 6.1
1806 Female, age 85, left hemisphere 5.5
2391 Female, age 94, left hemisphere 5.1
1856 Female, age 91, right hemisphere 5.0
2698 Female, age 72, unknown 4.7
Nucleus basalis of Meynert
nTPM: 6.1
2569 Male, age 61, both hemispheres 7.0
2484 Female, age 94, left hemisphere 6.1
2393 Male, age 80, right hemisphere 5.8
2821 Male, age 75, both hemispheres 5.3
Nucleus of the diagonal band
nTPM: 6.5
2029 Male, age 61, right hemisphere 7.1
1812 Female, age 91, both hemispheres 6.4
1979 Male, age 74, unknown 6.4
2195 Female, age 85, both hemispheres 6.3
2775 Male, age 80, right hemisphere 6.2
Olfactory tubercle
nTPM: 6.5
2487 Female, age 94, left hemisphere 7.0
2856 Male, age 75, right hemisphere 7.0
1998 Female, age 91, both hemispheres 6.3
1846 Male, age 80, right hemisphere 5.8
Putamen
nTPM: 5.8
1838 Male, age 80, right hemisphere 6.4
2482 Female, age 94, left hemisphere 5.9
2647 Male, age 75, left hemisphere 5.9
1937 Female, age 91, right hemisphere 5.7
2466 Female, age 79, unknown 5.7
2489 Female, age 72, unknown 5.7
1829 Male, age 74, unknown 5.1
Septal nuclei
nTPM: 6.5
2009 Female, age 91, both hemispheres 7.5
2059 Female, age 85, both hemispheres 6.8
2199 Male, age 80, right hemisphere 6.8
1960 Male, age 74, unknown 6.5
2394 Male, age 61, left hemisphere 6.3
2031 Female, age 72, unknown 6.0
2629 Female, age 94, right hemisphere 5.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 44.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 36.9
Samples: 246

Max nTPM: 89.5
Min nTPM: 10.8
Std nTPM: 13.1
Median nTPM: 35.6
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 89.5
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 83.5
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 83.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 76.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 74.1
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 66.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 65.5
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 65.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 64.7
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 64.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 63.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 44.0
Samples: 246

Max nTPM: 106.3
Min nTPM: 10.9
Std nTPM: 14.0
Median nTPM: 44.3
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 106.3
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 89.9
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 83.7
GTEX-1JJEA-0011-R6a-SM-EXUS1 60-69 years, male 79.0
GTEX-1LVA9-0011-R6a-SM-EYYWH 50-59 years, male 75.1
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 74.6
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 73.1
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 72.2
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 70.2
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 70.1
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 69.6
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Brain - Putamen (basal ganglia)
Average nTPM: 39.6
Samples: 205

Max nTPM: 78.2
Min nTPM: 11.8
Std nTPM: 12.5
Median nTPM: 38.4
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 78.2
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 69.4
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 69.4
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 67.8
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 65.7
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 64.8
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 63.7
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 63.6
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 62.8
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 62.5
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 62.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 39.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 32.9
FF:10164-103B2 76 years, female 32.9
Globus pallidus
Scaled Tags Per Million: 33.1
FF:10175-103C4 60 years, female 39.4
FF:10161-103A8 76 years, female 26.7
Nucleus accumbens
Scaled Tags Per Million: 22.1
FF:10037-101F1 23-56 years, mixed 22.1
Putamen
Scaled Tags Per Million: 39.8
FF:10176-103C5 60 years, female 39.8

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The Human Protein Atlas

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