MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:6.2 nTPM
HPA:6.2 nTPM
GTEx:38.2 nTPM
FANTOM5:21.6 Scaled Tags Per Million

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 6.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 5.5
2019 Male, age 18, unknown 6.4
2586 Male, age 75, left hemisphere 5.9
2411 Female, age 72, unknown 5.8
2828 Female, age 72, unknown 5.6
2219 Male, age 76, both hemispheres 5.5
1827 Male, age 72, unknown 5.4
1870 Female, age 42, unknown 5.3
2666 Male, age 74, left hemisphere 5.3
1830 Male, age 51, unknown 5.0
1833 Male, age 53, unknown 4.7
Dorsal raphe nucleus
nTPM: 6.2
2750 Male, age 76, both hemispheres 6.9
2047 Male, age 72, unknown 6.2
2298 Female, age 72, unknown 6.2
1828 Male, age 53, unknown 6.0
2016 Female, age 72, unknown 5.9
Inferior colliculus
nTPM: 5.7
1890 Male, age 53, unknown 5.8
1848 Female, age 42, unknown 5.7
2849 Male, age 72, unknown 5.6
2097 Female, age 72, unknown 5.5
Median raphe nucleus
nTPM: 6.0
2220 Male, age 76, midline 6.0
Pedunculopontine tegmental nucleus
nTPM: 5.1
1921 Female, age 85, both hemispheres 5.8
2334 Male, age 80, both hemispheres 5.5
2338 Male, age 61, both hemispheres 4.0
Periaquaductal grey, anterior
nTPM: 5.8
1795 Male, age 51, unknown 5.9
2502 Female, age 75, unknown 5.8
1947 Male, age 18, unknown 5.7
Periaquaductal grey, dorsal
nTPM: 5.8
2464 Female, age 72, unknown 6.2
1831 Male, age 72, unknown 5.9
1840 Male, age 53, unknown 5.9
2850 Male, age 76, both hemispheres 5.3
Periaquaductal grey, lateral
nTPM: 5.5
2140 Male, age 76, both hemispheres 5.6
2272 Male, age 74, both hemispheres 5.6
2053 Male, age 18, unknown 5.4
Pretectal area
nTPM: 6.1
2667 Female, age 75, unknown 7.5
2316 Male, age 76, right hemisphere 6.8
2007 Male, age 72, unknown 6.6
2224 Female, age 72, unknown 6.6
2273 Male, age 74, both hemispheres 6.4
1817 Female, age 42, unknown 5.9
1816 Male, age 51, unknown 5.7
2825 Male, age 18, unknown 5.7
2407 Male, age 75, both hemispheres 5.6
1944 Female, age 72, unknown 5.5
1815 Male, age 53, unknown 5.2
Red nucleus
nTPM: 5.6
2823 Male, age 76, right hemisphere 6.2
2769 Male, age 72, unknown 6.1
2227 Male, age 72, unknown 5.9
2725 Female, age 75, unknown 5.9
2588 Male, age 74, left hemisphere 5.7
1821 Female, age 72, unknown 5.6
2503 Female, age 72, unknown 5.6
1865 Male, age 51, unknown 5.5
2785 Male, age 18, unknown 5.5
1904 Male, age 53, unknown 5.3
1954 Female, age 42, unknown 5.1
2584 Male, age 75, left hemisphere 4.5
Substantia nigra
nTPM: 5.5
1941 Male, age 53, unknown 7.2
1851 Male, age 51, unknown 5.9
1889 Female, age 72, unknown 5.8
2665 Male, age 74, both hemispheres 5.8
1916 Female, age 42, unknown 5.6
2241 Male, age 72, unknown 5.4
2583 Male, age 75, right hemisphere 5.2
2699 Male, age 18, unknown 5.2
2409 Female, age 72, unknown 4.7
2590 Female, age 75, unknown 4.4
Superior colliculus
nTPM: 5.8
2087 Female, age 72, unknown 6.5
1796 Male, age 53, unknown 6.1
1839 Male, age 51, unknown 6.0
1895 Male, age 76, right hemisphere 5.9
2261 Male, age 18, unknown 5.8
2587 Male, age 74, left hemisphere 5.8
2664 Male, age 75, both hemispheres 5.8
1913 Female, age 42, unknown 5.7
2668 Female, age 75, unknown 5.6
1995 Male, age 72, unknown 4.8
Ventral tegmental area
nTPM: 5.8
2410 Female, age 72, unknown 6.5
1915 Female, age 42, unknown 6.0
1942 Male, age 51, unknown 6.0
2021 Male, age 53, unknown 6.0
2218 Male, age 76, both hemispheres 5.6
2223 Female, age 72, unknown 5.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 38.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 38.2
Samples: 139

Max nTPM: 88.2
Min nTPM: 10.5
Std nTPM: 14.5
Median nTPM: 36.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 88.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 83.9
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 71.9
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 68.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 65.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 64.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 63.0
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 59.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 59.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 59.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 59.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 21.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 21.6
FF:10158-103A5 76 years, female 21.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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