BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:49.9 nTPM
HPA:49.9 nTPM
GTEx:52.2 nTPM
FANTOM5:48.9 Scaled Tags Per Million
Pig:23.2 nTPM
Mouse:22.2 nTPM
Allen mouse:0.4 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA058975
Glial cells Low
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 49.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 41.8
2481 Female, age 94, left hemisphere 49.5
2288 Male, age 75, left hemisphere 42.9
2846 Female, age 79, unknown 42.5
2289 Male, age 61, right hemisphere 41.1
1781 Male, age 74, unknown 40.8
2290 Female, age 72, unknown 40.2
1857 Female, age 85, left hemisphere 38.8
1854 Male, age 80, left hemisphere 38.3
Claustrum
nTPM: 37.3
2198 Male, age 80, both hemispheres 39.8
2645 Female, age 72, unknown 39.1
2284 Female, age 91, both hemispheres 38.8
2392 Female, age 94, both hemispheres 37.7
2292 Female, age 85, both hemispheres 36.7
2196 Female, age 79, unknown 36.5
2491 Male, age 75, both hemispheres 35.8
1956 Male, age 74, unknown 35.7
2568 Male, age 61, both hemispheres 35.5
Globus pallidus, externus
nTPM: 49.1
1996 Male, age 80, right hemisphere 56.1
2646 Male, age 61, right hemisphere 50.0
2772 Female, age 79, unknown 48.9
2395 Male, age 75, both hemispheres 46.6
2567 Female, age 72, unknown 44.1
Globus pallidus, internus
nTPM: 49.9
2483 Female, age 94, right hemisphere 58.0
2037 Male, age 80, right hemisphere 53.6
1818 Male, age 74, unknown 52.3
2287 Male, age 75, right hemisphere 51.1
2778 Female, age 91, both hemispheres 46.8
2111 Female, age 85, right hemisphere 44.7
2566 Female, age 72, unknown 43.0
Nucleus accumbens
nTPM: 38.2
2286 Male, age 75, left hemisphere 42.9
2391 Female, age 94, left hemisphere 42.4
2732 Male, age 80, right hemisphere 39.1
2698 Female, age 72, unknown 38.0
1783 Male, age 74, unknown 36.9
1806 Female, age 85, left hemisphere 36.6
1856 Female, age 91, right hemisphere 36.1
2824 Male, age 61, right hemisphere 33.7
Nucleus basalis of Meynert
nTPM: 46.5
2569 Male, age 61, both hemispheres 53.3
2484 Female, age 94, left hemisphere 45.1
2821 Male, age 75, both hemispheres 44.0
2393 Male, age 80, right hemisphere 43.7
Nucleus of the diagonal band
nTPM: 41.2
1812 Female, age 91, both hemispheres 42.2
2775 Male, age 80, right hemisphere 42.1
2195 Female, age 85, both hemispheres 41.7
2029 Male, age 61, right hemisphere 40.5
1979 Male, age 74, unknown 39.5
Olfactory tubercle
nTPM: 39.4
2856 Male, age 75, right hemisphere 40.8
1846 Male, age 80, right hemisphere 40.2
1998 Female, age 91, both hemispheres 39.2
2487 Female, age 94, left hemisphere 37.3
Putamen
nTPM: 43.3
2482 Female, age 94, left hemisphere 48.1
2647 Male, age 75, left hemisphere 48.0
2489 Female, age 72, unknown 46.7
2466 Female, age 79, unknown 43.8
1829 Male, age 74, unknown 41.6
1937 Female, age 91, right hemisphere 38.1
1838 Male, age 80, right hemisphere 36.9
Septal nuclei
nTPM: 40.0
2199 Male, age 80, right hemisphere 42.7
2394 Male, age 61, left hemisphere 41.5
2031 Female, age 72, unknown 40.4
2059 Female, age 85, both hemispheres 39.4
1960 Male, age 74, unknown 39.1
2009 Female, age 91, both hemispheres 38.8
2629 Female, age 94, right hemisphere 38.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 52.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 43.0
Samples: 246

Max nTPM: 98.9
Min nTPM: 16.7
Std nTPM: 14.4
Median nTPM: 40.8
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 98.9
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 98.6
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 90.7
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 89.4
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 84.9
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 78.7
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 77.9
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 77.1
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 76.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 74.6
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 74.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 31.1
Samples: 246

Max nTPM: 89.2
Min nTPM: 12.8
Std nTPM: 12.1
Median nTPM: 27.0
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 89.2
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 73.3
GTEX-S7PM-0011-R6A-SM-3NM8F 60-69 years, male 68.3
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 61.4
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 61.3
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 61.1
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 60.8
GTEX-11GSP-0011-R6b-SM-57WBQ 60-69 years, female 59.6
GTEX-QVUS-0011-R6A-SM-3GACX 60-69 years, female 59.6
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 59.6
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 58.4
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Brain - Putamen (basal ganglia)
Average nTPM: 52.2
Samples: 205

Max nTPM: 117.4
Min nTPM: 18.3
Std nTPM: 19.2
Median nTPM: 49.1
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 117.4
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 108.6
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 102.1
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 101.1
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 95.0
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 93.5
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 90.2
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 87.7
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 86.8
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 85.4
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 85.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 48.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 35.1
FF:10164-103B2 76 years, female 35.1
Globus pallidus
Scaled Tags Per Million: 48.9
FF:10175-103C4 60 years, female 48.9
FF:10161-103A8 76 years, female 48.9
Nucleus accumbens
Scaled Tags Per Million: 38.8
FF:10037-101F1 23-56 years, mixed 38.8
Putamen
Scaled Tags Per Million: 21.3
FF:10176-103C5 60 years, female 21.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 23.2
Pig sample Sample description nTPM
Caudate
nTPM: 15.8
Samples: 4

Max nTPM: 17.2
Min nTPM: 14.5
Sample A Female 17.2
Sample B Female 15.4
Sample C Male 16.0
Sample D Male 14.5
Putamen
nTPM: 17.8
Samples: 4

Max nTPM: 24.8
Min nTPM: 13.4
Sample A Female 24.8
Sample B Female 13.4
Sample C Male 18.3
Sample D Male 14.7
Septum
nTPM: 23.3
Samples: 4

Max nTPM: 34.2
Min nTPM: 17.4
Sample A Female 20.0
Sample B Female 17.4
Sample C Male 34.2
Sample D Male 21.4
Ventral pallidum
nTPM: 20.0
Samples: 4

Max nTPM: 31.6
Min nTPM: 13.8
Sample A Female 13.8
Sample B Female 18.3
Sample C Male 31.6
Sample D Male 16.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 22.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 15.0
Samples: 4

Max nTPM: 18.3
Min nTPM: 12.7
Sample A Male 13.9
Sample B Male 12.7
Sample C Female 18.3
Sample D Female 15.2
Septum
nTPM: 17.4
Samples: 4

Max nTPM: 19.5
Min nTPM: 15.9
Sample A Male 17.6
Sample B Male 15.9
Sample C Female 19.5
Sample D Female 16.4
Ventral forebrain
nTPM: 22.2
Samples: 4

Max nTPM: 23.4
Min nTPM: 19.9
Sample A Male 22.8
Sample B Male 19.9
Sample C Female 22.8
Sample D Female 23.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.4
73769323 Antisense, RP_051121_04_B08, Mouse strain C57BL/6J (56 days, male) 0.4
69837243 Antisense, RP_050217_01_C10, Mouse strain C57BL/6J (56 days, male) 0.4
Pallidum
Expression energy: 0.3
69837243 Antisense, RP_050217_01_C10, Mouse strain C57BL/6J (56 days, male) 0.4
73769323 Antisense, RP_051121_04_B08, Mouse strain C57BL/6J (56 days, male) 0.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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