MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:56.8 nTPM
HPA:56.8 nTPM
GTEx:58.9 nTPM
FANTOM5:44.5 Scaled Tags Per Million
Pig:41.5 nTPM
Mouse:31.1 nTPM
Allen mouse:1.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 56.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 49.8
2586 Male, age 75, left hemisphere 56.9
2828 Female, age 72, unknown 54.2
2666 Male, age 74, left hemisphere 52.1
1870 Female, age 42, unknown 49.5
1833 Male, age 53, unknown 49.1
2019 Male, age 18, unknown 48.6
2219 Male, age 76, both hemispheres 48.0
1830 Male, age 51, unknown 47.3
1827 Male, age 72, unknown 46.9
2411 Female, age 72, unknown 45.9
Dorsal raphe nucleus
nTPM: 53.6
1828 Male, age 53, unknown 57.9
2047 Male, age 72, unknown 57.3
2016 Female, age 72, unknown 55.8
2298 Female, age 72, unknown 51.7
2750 Male, age 76, both hemispheres 45.3
Inferior colliculus
nTPM: 52.3
1890 Male, age 53, unknown 54.0
1848 Female, age 42, unknown 52.1
2849 Male, age 72, unknown 52.0
2097 Female, age 72, unknown 51.0
Median raphe nucleus
nTPM: 48.0
2220 Male, age 76, midline 48.0
Pedunculopontine tegmental nucleus
nTPM: 47.8
1921 Female, age 85, both hemispheres 48.5
2338 Male, age 61, both hemispheres 47.6
2334 Male, age 80, both hemispheres 47.2
Periaquaductal grey, anterior
nTPM: 56.8
1947 Male, age 18, unknown 63.4
1795 Male, age 51, unknown 56.3
2502 Female, age 75, unknown 50.8
Periaquaductal grey, dorsal
nTPM: 53.2
2850 Male, age 76, both hemispheres 59.5
1840 Male, age 53, unknown 53.8
2464 Female, age 72, unknown 52.7
1831 Male, age 72, unknown 46.7
Periaquaductal grey, lateral
nTPM: 53.0
2140 Male, age 76, both hemispheres 62.6
2053 Male, age 18, unknown 49.7
2272 Male, age 74, both hemispheres 46.8
Pretectal area
nTPM: 51.6
1817 Female, age 42, unknown 59.6
2667 Female, age 75, unknown 56.5
2224 Female, age 72, unknown 53.0
1815 Male, age 53, unknown 51.8
2316 Male, age 76, right hemisphere 51.6
1944 Female, age 72, unknown 51.2
2825 Male, age 18, unknown 50.4
1816 Male, age 51, unknown 50.3
2007 Male, age 72, unknown 49.8
2407 Male, age 75, both hemispheres 47.2
2273 Male, age 74, both hemispheres 46.4
Red nucleus
nTPM: 52.4
1821 Female, age 72, unknown 61.9
1954 Female, age 42, unknown 57.7
2769 Male, age 72, unknown 54.9
2227 Male, age 72, unknown 54.1
1904 Male, age 53, unknown 52.9
2503 Female, age 72, unknown 52.2
2588 Male, age 74, left hemisphere 51.0
1865 Male, age 51, unknown 50.9
2823 Male, age 76, right hemisphere 50.2
2785 Male, age 18, unknown 50.1
2725 Female, age 75, unknown 49.9
2584 Male, age 75, left hemisphere 42.4
Substantia nigra
nTPM: 51.3
2409 Female, age 72, unknown 55.8
2665 Male, age 74, both hemispheres 53.2
1851 Male, age 51, unknown 53.0
1916 Female, age 42, unknown 52.8
2699 Male, age 18, unknown 52.8
2241 Male, age 72, unknown 51.7
2590 Female, age 75, unknown 51.4
1889 Female, age 72, unknown 50.7
2583 Male, age 75, right hemisphere 48.0
1941 Male, age 53, unknown 44.0
Superior colliculus
nTPM: 49.0
1995 Male, age 72, unknown 51.5
2668 Female, age 75, unknown 51.2
1839 Male, age 51, unknown 50.6
2087 Female, age 72, unknown 50.1
2664 Male, age 75, both hemispheres 49.0
2261 Male, age 18, unknown 48.7
1895 Male, age 76, right hemisphere 48.3
1796 Male, age 53, unknown 47.7
1913 Female, age 42, unknown 47.3
2587 Male, age 74, left hemisphere 45.4
Ventral tegmental area
nTPM: 50.6
1915 Female, age 42, unknown 52.7
2021 Male, age 53, unknown 52.7
1942 Male, age 51, unknown 51.7
2410 Female, age 72, unknown 50.6
2218 Male, age 76, both hemispheres 49.5
2223 Female, age 72, unknown 46.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 58.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 58.9
Samples: 139

Max nTPM: 154.1
Min nTPM: 14.2
Std nTPM: 24.9
Median nTPM: 55.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 154.1
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 138.1
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 129.8
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 125.2
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 117.3
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 115.6
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 112.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 103.0
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 102.5
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 101.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 97.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 44.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 44.5
FF:10158-103A5 76 years, female 44.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 41.5
Pig sample Sample description nTPM
Midbrain
nTPM: 41.5
Samples: 4

Max nTPM: 60.9
Min nTPM: 29.2
Sample A Female 60.9
Sample B Female 41.5
Sample C Male 34.3
Sample D Male 29.2
Periaqueductal gray
nTPM: 41.0
Samples: 3

Max nTPM: 44.2
Min nTPM: 39.4
Sample B Female 39.4
Sample C Male 44.2
Sample D Male 39.4
Substantia nigra
nTPM: 40.7
Samples: 4

Max nTPM: 47.2
Min nTPM: 34.2
Sample A Female 40.3
Sample B Female 47.2
Sample C Male 41.1
Sample D Male 34.2
Superior colliculi
nTPM: 37.4
Samples: 4

Max nTPM: 44.2
Min nTPM: 31.9
Sample A Female 37.4
Sample B Female 44.2
Sample C Male 31.9
Sample D Male 35.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 31.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 31.1
Samples: 4

Max nTPM: 32.8
Min nTPM: 27.3
Sample A Male 31.3
Sample B Male 27.3
Sample C Female 32.8
Sample D Female 32.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.1
69837243 Antisense, RP_050217_01_C10, Mouse strain C57BL/6J (56 days, male) 1.2
73769323 Antisense, RP_051121_04_B08, Mouse strain C57BL/6J (56 days, male) 1.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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