BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:47.8 nTPM
HPA:47.8 nTPM
GTEx:43.9 nTPM
FANTOM5:122.1 Scaled Tags Per Million
Pig:50.3 nTPM
Mouse:193.3 nTPM
Allen mouse:5.5 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 47.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 47.6
2846 Female, age 79, unknown 52.3
1857 Female, age 85, left hemisphere 51.3
2288 Male, age 75, left hemisphere 47.7
1854 Male, age 80, left hemisphere 47.6
2290 Female, age 72, unknown 47.5
1781 Male, age 74, unknown 46.4
2481 Female, age 94, left hemisphere 46.0
2289 Male, age 61, right hemisphere 42.0
Claustrum
nTPM: 44.0
1956 Male, age 74, unknown 46.0
2392 Female, age 94, both hemispheres 45.4
2196 Female, age 79, unknown 44.9
2198 Male, age 80, both hemispheres 44.2
2292 Female, age 85, both hemispheres 44.2
2568 Male, age 61, both hemispheres 43.8
2645 Female, age 72, unknown 43.0
2491 Male, age 75, both hemispheres 42.6
2284 Female, age 91, both hemispheres 42.3
Globus pallidus, externus
nTPM: 44.9
2395 Male, age 75, both hemispheres 48.7
1996 Male, age 80, right hemisphere 47.8
2772 Female, age 79, unknown 46.1
2646 Male, age 61, right hemisphere 41.6
2567 Female, age 72, unknown 40.3
Globus pallidus, internus
nTPM: 46.4
2778 Female, age 91, both hemispheres 49.7
2287 Male, age 75, right hemisphere 49.1
2111 Female, age 85, right hemisphere 47.7
1818 Male, age 74, unknown 47.0
2037 Male, age 80, right hemisphere 45.9
2483 Female, age 94, right hemisphere 45.0
2566 Female, age 72, unknown 40.6
Nucleus accumbens
nTPM: 47.8
1856 Female, age 91, right hemisphere 50.1
1806 Female, age 85, left hemisphere 49.8
2391 Female, age 94, left hemisphere 48.7
2286 Male, age 75, left hemisphere 48.5
1783 Male, age 74, unknown 48.1
2824 Male, age 61, right hemisphere 48.0
2698 Female, age 72, unknown 47.7
2732 Male, age 80, right hemisphere 41.8
Nucleus basalis of Meynert
nTPM: 44.9
2393 Male, age 80, right hemisphere 47.1
2821 Male, age 75, both hemispheres 46.0
2484 Female, age 94, left hemisphere 45.2
2569 Male, age 61, both hemispheres 41.3
Nucleus of the diagonal band
nTPM: 43.6
2029 Male, age 61, right hemisphere 46.5
1812 Female, age 91, both hemispheres 45.5
2775 Male, age 80, right hemisphere 43.6
2195 Female, age 85, both hemispheres 42.0
1979 Male, age 74, unknown 40.5
Olfactory tubercle
nTPM: 43.5
1846 Male, age 80, right hemisphere 45.7
2856 Male, age 75, right hemisphere 43.6
1998 Female, age 91, both hemispheres 42.5
2487 Female, age 94, left hemisphere 42.0
Putamen
nTPM: 47.8
1829 Male, age 74, unknown 50.6
2466 Female, age 79, unknown 50.1
1937 Female, age 91, right hemisphere 49.0
1838 Male, age 80, right hemisphere 48.8
2482 Female, age 94, left hemisphere 47.6
2489 Female, age 72, unknown 44.2
2647 Male, age 75, left hemisphere 44.2
Septal nuclei
nTPM: 42.9
2031 Female, age 72, unknown 47.5
2629 Female, age 94, right hemisphere 43.7
2394 Male, age 61, left hemisphere 42.5
2199 Male, age 80, right hemisphere 42.1
2009 Female, age 91, both hemispheres 42.0
1960 Male, age 74, unknown 41.8
2059 Female, age 85, both hemispheres 40.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 43.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 41.0
Samples: 246

Max nTPM: 61.5
Min nTPM: 21.0
Std nTPM: 7.0
Median nTPM: 41.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 61.5
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 59.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 57.8
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 57.5
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 57.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 56.7
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 55.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 54.4
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 54.4
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 54.1
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 52.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 37.3
Samples: 246

Max nTPM: 64.2
Min nTPM: 20.9
Std nTPM: 6.7
Median nTPM: 37.2
GTEX-NPJ7-0011-R6a-SM-2I3G7 60-69 years, female 64.2
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 57.9
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 54.7
GTEX-1MA7X-0011-R6a-SM-EYYWR 60-69 years, male 53.7
GTEX-1LVA9-0011-R6a-SM-EYYWH 50-59 years, male 52.9
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 52.8
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 51.4
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 51.0
GTEX-T6MN-0011-R6A-SM-32QP8 50-59 years, male 50.3
GTEX-1IKK5-0011-R6b-SM-A9SLY 60-69 years, male 49.6
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 49.2
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Brain - Putamen (basal ganglia)
Average nTPM: 43.9
Samples: 205

Max nTPM: 62.2
Min nTPM: 27.0
Std nTPM: 6.6
Median nTPM: 43.4
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 62.2
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 62.0
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 60.7
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 58.9
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 58.2
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 58.0
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 57.2
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 56.3
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 56.0
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 55.2
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 55.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 122.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 113.1
FF:10164-103B2 76 years, female 113.1
Globus pallidus
Scaled Tags Per Million: 111.8
FF:10175-103C4 60 years, female 113.6
FF:10161-103A8 76 years, female 110.0
Nucleus accumbens
Scaled Tags Per Million: 106.1
FF:10037-101F1 23-56 years, mixed 106.1
Putamen
Scaled Tags Per Million: 122.1
FF:10176-103C5 60 years, female 122.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 50.3
Pig sample Sample description nTPM
Caudate
nTPM: 40.4
Samples: 4

Max nTPM: 43.8
Min nTPM: 35.5
Sample A Female 41.9
Sample B Female 40.4
Sample C Male 43.8
Sample D Male 35.5
Putamen
nTPM: 50.3
Samples: 4

Max nTPM: 61.2
Min nTPM: 37.6
Sample A Female 56.4
Sample B Female 37.6
Sample C Male 61.2
Sample D Male 45.9
Septum
nTPM: 47.1
Samples: 4

Max nTPM: 56.7
Min nTPM: 41.9
Sample A Female 56.7
Sample B Female 43.9
Sample C Male 45.7
Sample D Male 41.9
Ventral pallidum
nTPM: 41.1
Samples: 4

Max nTPM: 45.1
Min nTPM: 36.7
Sample A Female 38.8
Sample B Female 45.1
Sample C Male 36.7
Sample D Male 43.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 193.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 193.4
Samples: 4

Max nTPM: 196.0
Min nTPM: 187.8
Sample A Male 196.0
Sample B Male 187.8
Sample C Female 195.4
Sample D Female 194.2
Septum
nTPM: 150.1
Samples: 4

Max nTPM: 166.7
Min nTPM: 139.4
Sample A Male 146.3
Sample B Male 147.8
Sample C Female 166.7
Sample D Female 139.4
Ventral forebrain
nTPM: 169.7
Samples: 4

Max nTPM: 196.4
Min nTPM: 155.9
Sample A Male 158.2
Sample B Male 155.9
Sample C Female 196.4
Sample D Female 168.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 5.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 5.5
69407505 Antisense, RP_050414_01_G08, Mouse strain C57BL/6J (56 days, male) 5.5
Pallidum
Expression energy: 3.7
69407505 Antisense, RP_050414_01_G08, Mouse strain C57BL/6J (56 days, male) 3.7

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The Human Protein Atlas

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