MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:44.4 nTPM
HPA:44.4 nTPM
GTEx:34.3 nTPM
FANTOM5:125.9 Scaled Tags Per Million
Pig:59.2 nTPM
Mouse:119.8 nTPM
Allen mouse:3.8 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 44.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 43.1
1870 Female, age 42, unknown 46.3
2019 Male, age 18, unknown 44.4
1830 Male, age 51, unknown 44.1
2411 Female, age 72, unknown 43.9
1833 Male, age 53, unknown 43.5
2828 Female, age 72, unknown 42.8
1827 Male, age 72, unknown 42.2
2666 Male, age 74, left hemisphere 41.6
2219 Male, age 76, both hemispheres 41.4
2586 Male, age 75, left hemisphere 41.0
Dorsal raphe nucleus
nTPM: 41.8
2750 Male, age 76, both hemispheres 44.1
1828 Male, age 53, unknown 41.6
2016 Female, age 72, unknown 41.6
2298 Female, age 72, unknown 41.3
2047 Male, age 72, unknown 40.3
Inferior colliculus
nTPM: 42.7
1848 Female, age 42, unknown 43.1
2097 Female, age 72, unknown 43.1
1890 Male, age 53, unknown 42.7
2849 Male, age 72, unknown 41.8
Median raphe nucleus
nTPM: 41.8
2220 Male, age 76, midline 41.8
Pedunculopontine tegmental nucleus
nTPM: 43.5
2338 Male, age 61, both hemispheres 44.0
1921 Female, age 85, both hemispheres 43.3
2334 Male, age 80, both hemispheres 43.1
Periaquaductal grey, anterior
nTPM: 41.8
2502 Female, age 75, unknown 42.6
1947 Male, age 18, unknown 42.4
1795 Male, age 51, unknown 40.4
Periaquaductal grey, dorsal
nTPM: 41.5
1831 Male, age 72, unknown 42.1
2850 Male, age 76, both hemispheres 42.1
2464 Female, age 72, unknown 41.3
1840 Male, age 53, unknown 40.5
Periaquaductal grey, lateral
nTPM: 41.4
2053 Male, age 18, unknown 41.9
2272 Male, age 74, both hemispheres 41.3
2140 Male, age 76, both hemispheres 41.1
Pretectal area
nTPM: 42.8
1817 Female, age 42, unknown 45.3
1815 Male, age 53, unknown 44.5
2667 Female, age 75, unknown 43.4
1944 Female, age 72, unknown 43.2
2007 Male, age 72, unknown 43.2
2316 Male, age 76, right hemisphere 42.6
2825 Male, age 18, unknown 42.3
1816 Male, age 51, unknown 41.8
2224 Female, age 72, unknown 41.8
2273 Male, age 74, both hemispheres 41.8
2407 Male, age 75, both hemispheres 40.8
Red nucleus
nTPM: 44.4
1865 Male, age 51, unknown 47.5
1821 Female, age 72, unknown 47.4
1904 Male, age 53, unknown 46.3
1954 Female, age 42, unknown 46.3
2823 Male, age 76, right hemisphere 45.3
2227 Male, age 72, unknown 44.2
2769 Male, age 72, unknown 44.2
2785 Male, age 18, unknown 43.7
2503 Female, age 72, unknown 43.5
2588 Male, age 74, left hemisphere 42.1
2725 Female, age 75, unknown 41.9
2584 Male, age 75, left hemisphere 40.5
Substantia nigra
nTPM: 42.6
1889 Female, age 72, unknown 44.0
1851 Male, age 51, unknown 43.8
2241 Male, age 72, unknown 43.4
2583 Male, age 75, right hemisphere 42.9
2590 Female, age 75, unknown 42.3
2665 Male, age 74, both hemispheres 42.3
2699 Male, age 18, unknown 42.3
2409 Female, age 72, unknown 42.2
1941 Male, age 53, unknown 41.7
1916 Female, age 42, unknown 41.4
Superior colliculus
nTPM: 43.2
1913 Female, age 42, unknown 45.7
1995 Male, age 72, unknown 44.7
2587 Male, age 74, left hemisphere 44.3
1895 Male, age 76, right hemisphere 44.2
2668 Female, age 75, unknown 44.1
1839 Male, age 51, unknown 43.1
1796 Male, age 53, unknown 42.1
2261 Male, age 18, unknown 41.9
2087 Female, age 72, unknown 41.6
2664 Male, age 75, both hemispheres 39.9
Ventral tegmental area
nTPM: 42.6
2223 Female, age 72, unknown 44.5
2410 Female, age 72, unknown 44.1
2218 Male, age 76, both hemispheres 42.6
2021 Male, age 53, unknown 42.0
1915 Female, age 42, unknown 41.7
1942 Male, age 51, unknown 40.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 34.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 34.3
Samples: 139

Max nTPM: 63.9
Min nTPM: 21.2
Std nTPM: 7.9
Median nTPM: 32.5
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 63.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 57.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 55.1
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 52.0
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 50.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 50.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 50.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 49.9
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 49.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 48.8
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 48.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 125.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 125.9
FF:10158-103A5 76 years, female 125.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 59.2
Pig sample Sample description nTPM
Midbrain
nTPM: 55.4
Samples: 4

Max nTPM: 88.4
Min nTPM: 35.9
Sample A Female 88.4
Sample B Female 57.1
Sample C Male 35.9
Sample D Male 40.0
Periaqueductal gray
nTPM: 48.4
Samples: 3

Max nTPM: 49.9
Min nTPM: 46.1
Sample B Female 49.9
Sample C Male 49.1
Sample D Male 46.1
Substantia nigra
nTPM: 55.9
Samples: 4

Max nTPM: 68.6
Min nTPM: 44.0
Sample A Female 68.6
Sample B Female 58.5
Sample C Male 44.0
Sample D Male 52.5
Superior colliculi
nTPM: 59.2
Samples: 4

Max nTPM: 74.0
Min nTPM: 45.7
Sample A Female 70.3
Sample B Female 74.0
Sample C Male 45.7
Sample D Male 46.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 119.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 119.8
Samples: 4

Max nTPM: 125.3
Min nTPM: 112.5
Sample A Male 125.3
Sample B Male 112.5
Sample C Female 117.7
Sample D Female 123.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.8
69407505 Antisense, RP_050414_01_G08, Mouse strain C57BL/6J (56 days, male) 3.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.