We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
AC138969.1
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • AC138969.1
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:210.7 nTPM
HPA:210.7 nTPM
GTEx:169.7 nTPM

AMYGDALA - HPA Brain RNA-seq
Max nTPM 210.7
Sample id Sample description nTPM
Amygdala
nTPM: 188.2
2517 Female, age 94, left hemisphere 193.2
2814 Male, age 76, right hemisphere 189.3
1987 Female, age 91, left hemisphere 188.6
2695 Female, age 67, right hemisphere 184.9
2514 Male, age 75, right hemisphere 184.7
Basal amygdala
nTPM: 206.5
2685 Female, age 94, left hemisphere 226.9
2243 Female, age 91, right hemisphere 217.4
2827 Female, age 67, right hemisphere 212.4
1955 Male, age 76, both hemispheres 197.9
2609 Male, age 75, right hemisphere 193.2
2110 Male, age 80, left hemisphere 191.2
Central amygdala
nTPM: 196.6
2701 Female, age 91, right hemisphere 215.1
2239 Male, age 80, left hemisphere 206.4
1905 Male, age 76, both hemispheres 188.8
2515 Male, age 75, right hemisphere 186.7
2826 Female, age 94, left hemisphere 186.2
Corticomedial amygdala
nTPM: 210.7
2535 Female, age 67, right hemisphere 242.3
2429 Female, age 94, left hemisphere 216.1
2242 Female, age 91, right hemisphere 215.0
2240 Male, age 76, both hemispheres 205.6
2829 Male, age 80, left hemisphere 197.9
2428 Male, age 75, right hemisphere 187.4
Lateral amygdala
nTPM: 199.0
2255 Female, age 91, right hemisphere 219.1
2256 Male, age 80, left hemisphere 218.9
2830 Female, age 67, right hemisphere 194.2
2534 Female, age 94, left hemisphere 191.8
1883 Male, age 76, both hemispheres 185.4
2516 Male, age 75, right hemisphere 184.6
Stria terminalis, bed nucleus
nTPM: 204.1
2201 Male, age 74, unknown 215.0
2486 Female, age 94, both hemispheres 205.4
1974 Female, age 91, both hemispheres 192.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 169.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 169.7
Samples: 152

Max nTPM: 514.8
Min nTPM: 11.3
Std nTPM: 94.7
Median nTPM: 157.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 514.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 467.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 462.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 424.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 392.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 377.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 365.2
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 363.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 352.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 323.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 322.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 320.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 319.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 310.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 302.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 292.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 286.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 284.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 276.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 273.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 272.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 256.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 253.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 251.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 249.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 249.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 247.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 247.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 243.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 241.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 236.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 235.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 235.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 230.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 228.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 223.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 220.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 219.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 213.9
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 213.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 210.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 208.2
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 206.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 205.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 202.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 201.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 196.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 195.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 195.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 193.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 191.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 188.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 186.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 183.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 182.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 180.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 179.2
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 177.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 176.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 176.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 174.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 173.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 173.1
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 172.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 169.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 167.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 167.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 166.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 165.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 164.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 163.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 162.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 160.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 159.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 159.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 157.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 157.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 157.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 155.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 155.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 150.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 149.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 145.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 144.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 143.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 141.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 141.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 141.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 137.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 136.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 136.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 135.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 134.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 133.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 130.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 129.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 128.0
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 127.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 123.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 123.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 122.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 122.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 122.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 120.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 119.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 117.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 116.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 114.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 113.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 113.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 112.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 111.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 108.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 108.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 107.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 106.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 100.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 100.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 97.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 96.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 96.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 90.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 88.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 88.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 88.1
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 87.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 86.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 83.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 76.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 76.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 74.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 74.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 73.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 71.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 70.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 68.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 64.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 63.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 61.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 58.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 56.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 47.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 42.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 36.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 36.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 31.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 26.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 24.4
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 22.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 19.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 15.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 11.3
Show allShow less

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.