MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:201.8 nTPM
HPA:201.8 nTPM
GTEx:117.1 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 201.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 193.2
2219 Male, age 76, both hemispheres 215.6
2666 Male, age 74, left hemisphere 198.3
1830 Male, age 51, unknown 196.9
1833 Male, age 53, unknown 196.7
2828 Female, age 72, unknown 190.2
1827 Male, age 72, unknown 188.7
2411 Female, age 72, unknown 187.5
2019 Male, age 18, unknown 186.1
2586 Male, age 75, left hemisphere 186.1
1870 Female, age 42, unknown 185.8
Dorsal raphe nucleus
nTPM: 190.5
2047 Male, age 72, unknown 194.2
2750 Male, age 76, both hemispheres 194.0
1828 Male, age 53, unknown 191.4
2016 Female, age 72, unknown 187.7
2298 Female, age 72, unknown 185.4
Inferior colliculus
nTPM: 192.4
2849 Male, age 72, unknown 212.2
1848 Female, age 42, unknown 192.1
1890 Male, age 53, unknown 186.1
2097 Female, age 72, unknown 179.2
Median raphe nucleus
nTPM: 201.8
2220 Male, age 76, midline 201.8
Pedunculopontine tegmental nucleus
nTPM: 196.9
2334 Male, age 80, both hemispheres 199.2
2338 Male, age 61, both hemispheres 198.6
1921 Female, age 85, both hemispheres 192.8
Periaquaductal grey, anterior
nTPM: 187.8
1947 Male, age 18, unknown 189.3
1795 Male, age 51, unknown 187.8
2502 Female, age 75, unknown 186.3
Periaquaductal grey, dorsal
nTPM: 197.7
2850 Male, age 76, both hemispheres 212.4
2464 Female, age 72, unknown 199.7
1831 Male, age 72, unknown 191.5
1840 Male, age 53, unknown 187.4
Periaquaductal grey, lateral
nTPM: 199.2
2140 Male, age 76, both hemispheres 205.0
2272 Male, age 74, both hemispheres 203.3
2053 Male, age 18, unknown 189.1
Pretectal area
nTPM: 191.6
2407 Male, age 75, both hemispheres 196.7
2667 Female, age 75, unknown 196.1
2224 Female, age 72, unknown 195.3
2825 Male, age 18, unknown 194.9
2316 Male, age 76, right hemisphere 194.7
2273 Male, age 74, both hemispheres 191.4
1815 Male, age 53, unknown 189.5
1944 Female, age 72, unknown 188.2
2007 Male, age 72, unknown 188.0
1816 Male, age 51, unknown 187.4
1817 Female, age 42, unknown 185.1
Red nucleus
nTPM: 188.8
2823 Male, age 76, right hemisphere 198.4
2584 Male, age 75, left hemisphere 192.9
2785 Male, age 18, unknown 190.4
1865 Male, age 51, unknown 190.1
2769 Male, age 72, unknown 189.8
2588 Male, age 74, left hemisphere 189.0
2227 Male, age 72, unknown 188.6
2725 Female, age 75, unknown 188.1
1904 Male, age 53, unknown 186.7
1954 Female, age 42, unknown 185.0
2503 Female, age 72, unknown 185.0
1821 Female, age 72, unknown 181.8
Substantia nigra
nTPM: 188.3
2699 Male, age 18, unknown 200.7
1941 Male, age 53, unknown 199.9
2590 Female, age 75, unknown 187.7
2583 Male, age 75, right hemisphere 187.6
2665 Male, age 74, both hemispheres 187.0
1889 Female, age 72, unknown 186.1
1851 Male, age 51, unknown 183.9
2241 Male, age 72, unknown 183.9
1916 Female, age 42, unknown 183.7
2409 Female, age 72, unknown 183.0
Superior colliculus
nTPM: 190.4
1895 Male, age 76, right hemisphere 197.4
1839 Male, age 51, unknown 195.9
2664 Male, age 75, both hemispheres 192.0
1913 Female, age 42, unknown 191.4
2587 Male, age 74, left hemisphere 190.5
2087 Female, age 72, unknown 189.2
1796 Male, age 53, unknown 188.3
2668 Female, age 75, unknown 188.2
2261 Male, age 18, unknown 186.6
1995 Male, age 72, unknown 185.0
Ventral tegmental area
nTPM: 189.0
2218 Male, age 76, both hemispheres 195.7
2021 Male, age 53, unknown 191.3
2223 Female, age 72, unknown 190.2
1942 Male, age 51, unknown 186.5
2410 Female, age 72, unknown 185.3
1915 Female, age 42, unknown 184.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 117.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 117.1
Samples: 139

Max nTPM: 382.2
Min nTPM: 9.7
Std nTPM: 61.9
Median nTPM: 108.0
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 382.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 333.4
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 321.2
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 269.1
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 233.8
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 228.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 226.9
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 221.7
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 207.1
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 206.6
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 199.9
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The Human Protein Atlas

The Human Protein Atlas project is funded
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