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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Endocrine cells: Not detected
Enterocytes: Not detected
Enterocytes - Microvilli: High
Goblet cells: Not detected
Paneth cells: Not detected
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:1026.3 nTPM
HPA:1026.3 nTPM
GTEx:967.3 nTPM
FANTOM5:3547.6 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA041264Antibody HPA041271
Endocrine cells -Not detected
Enterocytes -Not detected
Enterocytes - Microvilli -High
Glandular cells High-
Goblet cells -Not detected
Paneth cells -Not detected





SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 1026.3
overview
Male, age 65
Small intestine sample 232
nTPM: 1026
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 967.4
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 1074.6
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 1037.4

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 967.3
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 967.3
Samples: 187

Max nTPM: 1962.6
Min nTPM: 494.8
Std nTPM: 254.0
Median nTPM: 933.3
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 1962.6
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 1852.3
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 1731.2
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 1703.7
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 1472.3
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 1451.5
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 1439.7
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 1437.1
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 1429.0
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 1395.3
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 1382.8
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 1368.8
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 1333.3
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 1332.6
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 1331.1
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 1329.2
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 1307.3
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 1302.8
GTEX-144GM-1026-SM-79OKU 20-29 years, male 1300.6
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 1300.0
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 1296.2
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 1288.4
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 1277.2
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 1266.3
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 1263.3
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 1245.0
GTEX-1C475-1426-SM-793CH 40-49 years, female 1243.6
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 1228.2
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 1213.9
GTEX-14PK6-1626-SM-6871I 70-79 years, female 1212.7
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 1209.5
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 1197.3
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 1194.6
GTEX-1122O-1326-SM-5H11F 60-69 years, female 1186.2
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 1186.2
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 1179.3
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 1170.3
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 1162.4
GTEX-YFCO-1326-SM-664NV 40-49 years, male 1159.6
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 1159.1
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 1153.7
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 1149.4
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 1145.7
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 1143.1
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 1141.9
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 1134.9
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 1134.0
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 1132.8
GTEX-14PKU-1626-SM-6871C 40-49 years, female 1132.7
GTEX-183FY-1626-SM-793D8 20-29 years, male 1127.8
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 1125.6
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 1120.2
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 1119.8
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 1117.7
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 1109.2
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 1092.2
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 1077.0
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 1073.0
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 1072.6
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 1066.1
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 1063.1
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 1062.2
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 1061.1
GTEX-111YS-1426-SM-5GID8 60-69 years, male 1059.7
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 1021.4
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 1019.8
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 1017.9
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 1016.2
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 1011.3
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 1011.1
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 1009.0
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 1008.0
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 1003.5
GTEX-13111-1426-SM-5DUW3 50-59 years, male 1002.5
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 1001.3
GTEX-1192X-2526-SM-59868 50-59 years, male 995.0
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 993.9
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 993.2
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 985.7
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 973.0
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 966.4
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 966.2
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 959.0
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 956.7
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 952.8
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 950.3
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 948.5
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 946.3
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 944.1
GTEX-117YX-0326-SM-5GICL 50-59 years, male 943.2
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 942.0
GTEX-13113-1226-SM-5EGHT 60-69 years, female 940.7
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 935.6
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 933.3
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 932.9
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 925.4
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 925.1
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 923.8
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 920.6
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 919.7
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 918.4
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 913.1
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 911.2
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 906.5
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 904.1
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 902.1
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 901.4
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 900.6
GTEX-13O61-1326-SM-5KM31 60-69 years, male 896.8
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 896.0
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 890.6
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 883.6
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 880.6
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 877.4
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 875.4
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 871.5
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 866.8
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 859.2
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 851.1
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 841.0
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 833.1
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 827.5
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 825.8
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 818.3
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 817.8
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 812.4
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 811.6
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 805.8
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 805.4
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 804.8
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 795.2
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 793.7
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 792.6
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 790.7
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 785.9
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 785.4
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 783.9
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 779.2
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 778.3
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 776.0
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 766.8
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 761.0
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 757.6
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 755.1
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 754.5
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 754.2
GTEX-ZTSS-0926-SM-59865 40-49 years, male 753.8
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 752.2
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 746.9
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 738.3
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 736.0
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 733.1
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 732.5
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 722.5
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 718.0
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 716.8
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 715.9
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 713.8
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 712.7
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 708.9
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 704.5
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 691.7
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 690.7
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 689.5
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 687.4
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 686.3
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 683.0
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 682.3
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 682.2
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 677.2
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 673.5
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 670.6
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 666.5
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 661.9
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 655.6
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 649.5
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 633.8
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 633.6
GTEX-14PN3-2026-SM-68729 60-69 years, female 631.0
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 630.5
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 615.4
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 608.8
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 600.9
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 579.6
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 561.9
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 499.3
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 494.8
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 3547.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 3547.6
FF:10024-101D6 15,40,85 years, mixed 3547.6

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