MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:175.8 nTPM
HPA:175.8 nTPM
GTEx:184.2 nTPM
FANTOM5:125.7 Scaled Tags Per Million
Pig:160.2 nTPM
Mouse:355.1 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 175.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 168.7
2019 Male, age 18, unknown 180.7
2586 Male, age 75, left hemisphere 171.1
1827 Male, age 72, unknown 170.5
2411 Female, age 72, unknown 168.6
1870 Female, age 42, unknown 168.0
2219 Male, age 76, both hemispheres 167.6
2828 Female, age 72, unknown 166.8
1833 Male, age 53, unknown 166.1
1830 Male, age 51, unknown 164.5
2666 Male, age 74, left hemisphere 163.3
Dorsal raphe nucleus
nTPM: 171.2
2298 Female, age 72, unknown 175.6
1828 Male, age 53, unknown 174.3
2047 Male, age 72, unknown 171.8
2750 Male, age 76, both hemispheres 169.0
2016 Female, age 72, unknown 165.5
Inferior colliculus
nTPM: 173.6
1890 Male, age 53, unknown 179.7
2097 Female, age 72, unknown 176.4
1848 Female, age 42, unknown 171.2
2849 Male, age 72, unknown 167.1
Median raphe nucleus
nTPM: 169.1
2220 Male, age 76, midline 169.1
Pedunculopontine tegmental nucleus
nTPM: 174.1
2338 Male, age 61, both hemispheres 176.1
2334 Male, age 80, both hemispheres 173.7
1921 Female, age 85, both hemispheres 172.6
Periaquaductal grey, anterior
nTPM: 169.3
1947 Male, age 18, unknown 171.2
1795 Male, age 51, unknown 169.3
2502 Female, age 75, unknown 167.5
Periaquaductal grey, dorsal
nTPM: 167.0
2850 Male, age 76, both hemispheres 169.3
1831 Male, age 72, unknown 167.6
1840 Male, age 53, unknown 166.2
2464 Female, age 72, unknown 165.0
Periaquaductal grey, lateral
nTPM: 166.9
2272 Male, age 74, both hemispheres 170.4
2140 Male, age 76, both hemispheres 165.6
2053 Male, age 18, unknown 164.8
Pretectal area
nTPM: 175.8
1817 Female, age 42, unknown 188.7
2007 Male, age 72, unknown 186.8
1944 Female, age 72, unknown 183.0
1816 Male, age 51, unknown 182.8
2667 Female, age 75, unknown 176.1
1815 Male, age 53, unknown 175.0
2224 Female, age 72, unknown 170.7
2273 Male, age 74, both hemispheres 170.6
2316 Male, age 76, right hemisphere 167.8
2407 Male, age 75, both hemispheres 167.7
2825 Male, age 18, unknown 164.2
Red nucleus
nTPM: 174.1
1821 Female, age 72, unknown 185.0
2725 Female, age 75, unknown 178.6
2785 Male, age 18, unknown 178.2
2503 Female, age 72, unknown 174.7
1865 Male, age 51, unknown 174.3
2227 Male, age 72, unknown 174.0
2769 Male, age 72, unknown 173.6
1954 Female, age 42, unknown 173.5
2823 Male, age 76, right hemisphere 172.9
1904 Male, age 53, unknown 171.6
2588 Male, age 74, left hemisphere 168.4
2584 Male, age 75, left hemisphere 164.8
Substantia nigra
nTPM: 175.7
1916 Female, age 42, unknown 185.9
1851 Male, age 51, unknown 181.5
1889 Female, age 72, unknown 181.2
1941 Male, age 53, unknown 178.3
2409 Female, age 72, unknown 177.5
2699 Male, age 18, unknown 172.5
2241 Male, age 72, unknown 172.2
2665 Male, age 74, both hemispheres 172.2
2590 Female, age 75, unknown 169.5
2583 Male, age 75, right hemisphere 166.3
Superior colliculus
nTPM: 170.6
2087 Female, age 72, unknown 175.0
2587 Male, age 74, left hemisphere 174.3
1895 Male, age 76, right hemisphere 173.1
1796 Male, age 53, unknown 172.7
2668 Female, age 75, unknown 172.7
2261 Male, age 18, unknown 169.9
1913 Female, age 42, unknown 169.0
2664 Male, age 75, both hemispheres 167.2
1995 Male, age 72, unknown 167.1
1839 Male, age 51, unknown 165.2
Ventral tegmental area
nTPM: 172.3
1915 Female, age 42, unknown 178.4
2410 Female, age 72, unknown 176.1
2218 Male, age 76, both hemispheres 173.8
1942 Male, age 51, unknown 170.5
2223 Female, age 72, unknown 170.0
2021 Male, age 53, unknown 164.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 184.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 184.2
Samples: 139

Max nTPM: 329.4
Min nTPM: 81.3
Std nTPM: 48.3
Median nTPM: 178.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 329.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 321.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 317.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 303.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 294.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 285.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 278.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 273.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 271.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 269.1
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 268.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 125.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 125.7
FF:10158-103A5 76 years, female 125.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 160.2
Pig sample Sample description nTPM
Midbrain
nTPM: 127.5
Samples: 4

Max nTPM: 136.5
Min nTPM: 114.7
Sample A Female 130.2
Sample B Female 128.7
Sample C Male 136.5
Sample D Male 114.7
Periaqueductal gray
nTPM: 96.4
Samples: 3

Max nTPM: 102.0
Min nTPM: 89.7
Sample B Female 97.4
Sample C Male 102.0
Sample D Male 89.7
Substantia nigra
nTPM: 126.0
Samples: 4

Max nTPM: 195.6
Min nTPM: 83.3
Sample A Female 195.6
Sample B Female 106.6
Sample C Male 118.4
Sample D Male 83.3
Superior colliculi
nTPM: 160.2
Samples: 4

Max nTPM: 207.3
Min nTPM: 127.8
Sample A Female 207.3
Sample B Female 127.8
Sample C Male 176.9
Sample D Male 128.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 355.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 355.2
Samples: 4

Max nTPM: 423.1
Min nTPM: 288.5
Sample A Male 423.1
Sample B Male 316.3
Sample C Female 288.5
Sample D Female 392.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
71763957 Antisense, RP_050921_02_H08, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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