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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:179.6 nTPM
HPA:179.6 nTPM
GTEx:116.5 nTPM
FANTOM5:140.7 Scaled Tags Per Million
Pig:135.6 nTPM

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 179.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 173.9
1981 Female, age 72, midline 183.1
2048 Male, age 55, midline 172.9
2194 Female, age 79, both hemispheres 172.6
2565 Male, age 75, midline 171.9
2816 Male, age 47, midline 169.0
Cervical spinal cord, dorsal horn
nTPM: 179.6
2173 Female, age 72, unknown 186.7
2069 Male, age 47, both hemispheres 181.9
2721 Male, age 90, both hemispheres 180.4
2296 Male, age 66, both hemispheres 179.9
2297 Male, age 75, both hemispheres 177.2
1877 Male, age 55, unknown 171.8
Cervical spinal cord, ventral horn
nTPM: 174.4
2098 Female, age 72, unknown 186.3
2068 Male, age 55, unknown 174.3
2295 Male, age 66, both hemispheres 173.1
2480 Male, age 75, both hemispheres 172.5
2809 Male, age 90, both hemispheres 172.0
2820 Female, age 79, both hemispheres 168.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 116.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 116.5
Samples: 159

Max nTPM: 203.9
Min nTPM: 50.9
Std nTPM: 28.2
Median nTPM: 112.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 203.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 187.5
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 182.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 181.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 181.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 180.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 175.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 173.8
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 173.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 172.1
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 169.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 160.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 160.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 158.1
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 155.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 155.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 155.0
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 154.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 152.5
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 150.2
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 149.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 149.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 148.2
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 146.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 144.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 143.6
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 143.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 142.6
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 142.4
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 142.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 141.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 141.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 141.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 141.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 141.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 140.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 138.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 136.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 135.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 134.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 133.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 133.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 131.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 131.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 131.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 131.4
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 130.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 130.2
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 130.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 130.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 127.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 127.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 125.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 124.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 123.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 123.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 123.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 121.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 120.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 120.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 119.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 119.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 118.5
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 118.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 117.6
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 117.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 116.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 116.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 115.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 114.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 114.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 114.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 113.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 113.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 113.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 112.9
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 112.7
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 112.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 112.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 112.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 111.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 111.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 111.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 111.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 110.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 110.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 108.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 108.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 107.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 107.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 105.0
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 105.0
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 104.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 104.4
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 104.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 104.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 103.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 103.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 103.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 102.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 101.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 101.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 100.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 100.2
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 100.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 100.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 100.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 99.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 99.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 99.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 99.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 99.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 98.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 98.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 98.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 98.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 97.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 97.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 97.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 96.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 96.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 95.9
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 95.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 95.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 95.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 94.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 93.9
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 93.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 93.2
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 93.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 92.8
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 92.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 92.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 90.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 90.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 90.0
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 89.6
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 88.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 88.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 87.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 87.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 85.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 85.2
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 84.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 84.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 83.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 82.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 81.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 80.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 80.2
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 77.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 77.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 77.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 74.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 73.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 65.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 64.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 62.0
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 50.9
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 140.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 140.7
FF:10181-103D1 60 years, female 167.3
FF:10159-103A6 76 years, female 114.0

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 135.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 101.9
Samples: 4

Max nTPM: 106.4
Min nTPM: 97.4
Sample A Female 106.4
Sample B Female 97.4
Sample C Male 105.2
Sample D Male 98.5
Ventral spinal cord
nTPM: 135.6
Samples: 4

Max nTPM: 155.7
Min nTPM: 102.2
Sample A Female 129.9
Sample B Female 155.7
Sample C Male 154.5
Sample D Male 102.2

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