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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:118.4 nTPM
HPA:118.4 nTPM
GTEx:207.9 nTPM
FANTOM5:533.1 Scaled Tags Per Million
Pig:203.3 nTPM

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 118.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 96.4
2194 Female, age 79, both hemispheres 114.2
1981 Female, age 72, midline 103.3
2816 Male, age 47, midline 90.9
2565 Male, age 75, midline 89.2
2048 Male, age 55, midline 84.3
Cervical spinal cord, dorsal horn
nTPM: 104.3
2296 Male, age 66, both hemispheres 134.3
2173 Female, age 72, unknown 130.3
1877 Male, age 55, unknown 105.1
2069 Male, age 47, both hemispheres 97.0
2721 Male, age 90, both hemispheres 82.2
2297 Male, age 75, both hemispheres 76.7
Cervical spinal cord, ventral horn
nTPM: 118.4
2480 Male, age 75, both hemispheres 133.4
2068 Male, age 55, unknown 128.3
2820 Female, age 79, both hemispheres 124.4
2809 Male, age 90, both hemispheres 122.7
2295 Male, age 66, both hemispheres 121.6
2098 Female, age 72, unknown 80.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 207.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 207.9
Samples: 159

Max nTPM: 550.0
Min nTPM: 39.8
Std nTPM: 77.9
Median nTPM: 206.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 550.0
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 404.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 389.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 379.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 377.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 348.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 346.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 341.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 337.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 327.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 322.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 317.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 316.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 315.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 313.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 312.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 309.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 301.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 296.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 294.8
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 291.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 290.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 283.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 282.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 281.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 281.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 279.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 277.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 276.7
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 273.8
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 268.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 265.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 264.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 263.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 262.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 259.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 258.5
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 257.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 255.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 255.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 251.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 250.5
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 250.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 247.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 246.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 246.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 245.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 243.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 242.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 240.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 239.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 236.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 236.4
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 235.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 235.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 234.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 232.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 230.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 229.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 226.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 226.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 226.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 225.0
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 224.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 222.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 221.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 219.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 217.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 216.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 215.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 214.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 214.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 214.3
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 214.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 212.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 211.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 208.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 208.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 207.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 206.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 206.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 204.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 200.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 200.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 198.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 190.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 188.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 186.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 186.0
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 186.0
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 185.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 183.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 179.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 179.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 178.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 178.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 176.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 175.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 175.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 174.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 174.2
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 172.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 172.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 170.9
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 169.8
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 169.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 169.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 169.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 168.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 168.2
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 167.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 166.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 162.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 162.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 162.3
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 160.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 160.0
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 158.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 156.7
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 155.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 155.1
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 154.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 153.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 152.7
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 152.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 151.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 151.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 150.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 144.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 143.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 143.4
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 140.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 139.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 137.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 135.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 134.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 129.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 129.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 127.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 127.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 126.8
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 125.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 120.1
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 119.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 113.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 107.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 102.0
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 100.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 98.9
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 93.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 85.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 82.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 78.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 77.8
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 61.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 59.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 45.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 45.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 39.8
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 533.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 533.1
FF:10181-103D1 60 years, female 822.4
FF:10159-103A6 76 years, female 243.7

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 203.3
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 116.4
Samples: 4

Max nTPM: 165.0
Min nTPM: 63.8
Sample A Female 165.0
Sample B Female 102.3
Sample C Male 63.8
Sample D Male 134.5
Ventral spinal cord
nTPM: 203.3
Samples: 4

Max nTPM: 242.4
Min nTPM: 160.0
Sample A Female 242.4
Sample B Female 224.5
Sample C Male 186.2
Sample D Male 160.0

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