MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:57.9 nTPM
HPA:57.9 nTPM
GTEx:146.7 nTPM
FANTOM5:30.5 Scaled Tags Per Million
Pig:192.5 nTPM
Mouse:332.4 nTPM
Allen mouse:18.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 57.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 41.2
2019 Male, age 18, unknown 62.1
2586 Male, age 75, left hemisphere 54.7
2828 Female, age 72, unknown 51.2
1827 Male, age 72, unknown 49.9
2219 Male, age 76, both hemispheres 48.4
2666 Male, age 74, left hemisphere 46.4
2411 Female, age 72, unknown 31.5
1870 Female, age 42, unknown 24.5
1833 Male, age 53, unknown 23.9
1830 Male, age 51, unknown 19.5
Dorsal raphe nucleus
nTPM: 29.9
1828 Male, age 53, unknown 40.4
2047 Male, age 72, unknown 37.1
2298 Female, age 72, unknown 33.4
2750 Male, age 76, both hemispheres 28.6
2016 Female, age 72, unknown 10.2
Inferior colliculus
nTPM: 37.3
2097 Female, age 72, unknown 45.5
1890 Male, age 53, unknown 40.0
1848 Female, age 42, unknown 32.8
2849 Male, age 72, unknown 31.1
Median raphe nucleus
nTPM: 43.4
2220 Male, age 76, midline 43.4
Pedunculopontine tegmental nucleus
nTPM: 39.8
1921 Female, age 85, both hemispheres 56.1
2334 Male, age 80, both hemispheres 36.7
2338 Male, age 61, both hemispheres 26.6
Periaquaductal grey, anterior
nTPM: 35.6
1795 Male, age 51, unknown 45.0
1947 Male, age 18, unknown 36.4
2502 Female, age 75, unknown 25.4
Periaquaductal grey, dorsal
nTPM: 20.2
1831 Male, age 72, unknown 28.3
2850 Male, age 76, both hemispheres 20.6
2464 Female, age 72, unknown 16.5
1840 Male, age 53, unknown 15.2
Periaquaductal grey, lateral
nTPM: 8.4
2053 Male, age 18, unknown 10.4
2272 Male, age 74, both hemispheres 9.7
2140 Male, age 76, both hemispheres 5.0
Pretectal area
nTPM: 57.9
1944 Female, age 72, unknown 103.6
2007 Male, age 72, unknown 101.7
1817 Female, age 42, unknown 98.4
1816 Male, age 51, unknown 98.2
2667 Female, age 75, unknown 87.4
1815 Male, age 53, unknown 70.8
2407 Male, age 75, both hemispheres 21.0
2825 Male, age 18, unknown 18.9
2224 Female, age 72, unknown 14.7
2316 Male, age 76, right hemisphere 12.5
2273 Male, age 74, both hemispheres 10.2
Red nucleus
nTPM: 35.1
2785 Male, age 18, unknown 62.8
1821 Female, age 72, unknown 48.8
2588 Male, age 74, left hemisphere 44.0
1954 Female, age 42, unknown 34.7
2584 Male, age 75, left hemisphere 33.3
2823 Male, age 76, right hemisphere 32.3
2503 Female, age 72, unknown 31.4
2769 Male, age 72, unknown 30.2
1865 Male, age 51, unknown 27.9
2227 Male, age 72, unknown 26.8
1904 Male, age 53, unknown 26.1
2725 Female, age 75, unknown 23.3
Substantia nigra
nTPM: 54.0
1889 Female, age 72, unknown 93.9
2665 Male, age 74, both hemispheres 93.2
1916 Female, age 42, unknown 91.5
1941 Male, age 53, unknown 68.3
1851 Male, age 51, unknown 53.8
2699 Male, age 18, unknown 35.1
2409 Female, age 72, unknown 33.9
2583 Male, age 75, right hemisphere 29.8
2241 Male, age 72, unknown 25.4
2590 Female, age 75, unknown 15.3
Superior colliculus
nTPM: 42.6
2668 Female, age 75, unknown 85.3
2087 Female, age 72, unknown 74.8
1796 Male, age 53, unknown 50.5
1895 Male, age 76, right hemisphere 48.3
2664 Male, age 75, both hemispheres 36.9
2261 Male, age 18, unknown 35.8
1839 Male, age 51, unknown 27.3
1913 Female, age 42, unknown 24.8
1995 Male, age 72, unknown 21.5
2587 Male, age 74, left hemisphere 21.1
Ventral tegmental area
nTPM: 38.2
2218 Male, age 76, both hemispheres 57.2
1915 Female, age 42, unknown 54.9
2410 Female, age 72, unknown 51.0
1942 Male, age 51, unknown 32.7
2021 Male, age 53, unknown 16.7
2223 Female, age 72, unknown 16.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 146.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 146.7
Samples: 139

Max nTPM: 456.2
Min nTPM: 22.9
Std nTPM: 87.2
Median nTPM: 136.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 456.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 404.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 403.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 380.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 327.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 315.2
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 308.0
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 286.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 266.0
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 265.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 260.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 30.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 30.5
FF:10158-103A5 76 years, female 30.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 192.5
Pig sample Sample description nTPM
Midbrain
nTPM: 142.5
Samples: 4

Max nTPM: 242.6
Min nTPM: 64.1
Sample A Female 64.1
Sample B Female 107.9
Sample C Male 242.6
Sample D Male 155.5
Periaqueductal gray
nTPM: 87.2
Samples: 3

Max nTPM: 102.3
Min nTPM: 66.0
Sample B Female 93.3
Sample C Male 102.3
Sample D Male 66.0
Substantia nigra
nTPM: 121.0
Samples: 4

Max nTPM: 184.8
Min nTPM: 69.3
Sample A Female 184.8
Sample B Female 77.2
Sample C Male 152.6
Sample D Male 69.3
Superior colliculi
nTPM: 192.5
Samples: 4

Max nTPM: 279.6
Min nTPM: 110.9
Sample A Female 214.4
Sample B Female 110.9
Sample C Male 279.6
Sample D Male 165.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 332.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 332.4
Samples: 4

Max nTPM: 340.4
Min nTPM: 325.7
Sample A Male 340.4
Sample B Male 325.7
Sample C Female 325.8
Sample D Female 337.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 18.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 18.3
68196909 Antisense, RP_041116_01_D02, Mouse strain C57BL/6J (56 days, male) 18.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.