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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:21.6 nTPM
HPA:21.6 nTPM
GTEx:55.4 nTPM
FANTOM5:76.6 Scaled Tags Per Million
Pig:102.9 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 21.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 19.4
2194 Female, age 79, both hemispheres 37.4
2565 Male, age 75, midline 22.2
1981 Female, age 72, midline 14.8
2816 Male, age 47, midline 14.5
2048 Male, age 55, midline 7.9
Cervical spinal cord, dorsal horn
nTPM: 21.4
2721 Male, age 90, both hemispheres 43.0
2297 Male, age 75, both hemispheres 41.4
1877 Male, age 55, unknown 18.3
2173 Female, age 72, unknown 17.1
2069 Male, age 47, both hemispheres 8.4
2296 Male, age 66, both hemispheres 0.0
Cervical spinal cord, ventral horn
nTPM: 21.6
2820 Female, age 79, both hemispheres 55.1
2068 Male, age 55, unknown 32.8
2480 Male, age 75, both hemispheres 20.1
2295 Male, age 66, both hemispheres 14.2
2809 Male, age 90, both hemispheres 7.1
2098 Female, age 72, unknown 0.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 55.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 55.4
Samples: 159

Max nTPM: 180.5
Min nTPM: 20.1
Std nTPM: 29.2
Median nTPM: 45.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 180.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 169.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 165.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 131.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 121.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 119.6
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 114.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 113.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 112.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 109.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 108.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 108.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 107.9
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 107.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 100.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 98.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 95.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 94.3
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 94.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 89.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 87.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 85.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 82.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 81.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 81.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 78.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 78.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 75.6
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 75.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 75.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 75.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 75.0
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 73.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 72.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 72.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 71.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 69.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 67.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 67.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 67.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 67.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 67.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 66.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 66.0
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 66.0
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 62.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 62.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 62.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 62.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 60.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 59.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 59.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 59.3
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 58.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 58.5
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 58.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 58.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 56.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 56.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 54.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 53.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 52.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 52.4
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 51.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 51.1
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 50.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 50.6
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 50.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 48.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 48.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 48.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 48.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 48.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 48.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 48.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 47.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 46.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 46.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 45.7
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 45.1
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 45.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 44.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 44.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 44.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 44.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 44.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 43.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 43.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 43.0
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 42.9
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 42.7
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 41.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 41.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 41.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 41.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 41.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 40.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 40.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 40.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 39.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 39.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 39.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 38.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 38.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 38.4
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 38.4
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 38.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 38.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 37.9
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 37.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 37.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 37.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 37.1
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 37.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 37.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 36.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 36.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 36.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 35.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 35.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 35.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 35.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 35.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 34.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 34.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 34.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 33.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 32.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 32.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 32.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 31.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 31.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 31.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 31.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 30.8
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 30.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 30.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 30.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 29.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 29.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 28.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 28.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 28.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 28.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 27.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 27.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 27.0
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 27.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 26.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 26.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 26.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 25.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 25.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 25.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 24.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 24.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 23.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 22.6
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 20.1
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 76.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 76.6
FF:10181-103D1 60 years, female 119.7
FF:10159-103A6 76 years, female 33.6

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 102.9
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 67.6
Samples: 4

Max nTPM: 107.2
Min nTPM: 25.9
Sample A Female 107.2
Sample B Female 37.5
Sample C Male 25.9
Sample D Male 99.6
Ventral spinal cord
nTPM: 103.0
Samples: 4

Max nTPM: 127.0
Min nTPM: 62.0
Sample A Female 102.6
Sample B Female 127.0
Sample C Male 120.2
Sample D Male 62.0

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