BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:37.7 nTPM
HPA:37.7 nTPM
GTEx:64.2 nTPM
FANTOM5:24.2 Scaled Tags Per Million
Pig:12.1 nTPM
Mouse:10.4 nTPM
Allen mouse:0.0 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 37.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 34.7
2481 Female, age 94, left hemisphere 38.0
2290 Female, age 72, unknown 35.4
1854 Male, age 80, left hemisphere 34.9
1857 Female, age 85, left hemisphere 34.9
2288 Male, age 75, left hemisphere 34.2
2846 Female, age 79, unknown 33.8
1781 Male, age 74, unknown 33.2
2289 Male, age 61, right hemisphere 32.9
Claustrum
nTPM: 32.8
2198 Male, age 80, both hemispheres 35.3
2491 Male, age 75, both hemispheres 33.7
2392 Female, age 94, both hemispheres 33.6
2292 Female, age 85, both hemispheres 33.4
2196 Female, age 79, unknown 32.7
2284 Female, age 91, both hemispheres 32.4
1956 Male, age 74, unknown 31.7
2645 Female, age 72, unknown 31.6
2568 Male, age 61, both hemispheres 31.0
Globus pallidus, externus
nTPM: 37.7
1996 Male, age 80, right hemisphere 42.3
2772 Female, age 79, unknown 39.5
2646 Male, age 61, right hemisphere 37.1
2395 Male, age 75, both hemispheres 36.5
2567 Female, age 72, unknown 33.0
Globus pallidus, internus
nTPM: 37.2
2483 Female, age 94, right hemisphere 43.5
2287 Male, age 75, right hemisphere 39.4
2778 Female, age 91, both hemispheres 38.7
2037 Male, age 80, right hemisphere 35.8
1818 Male, age 74, unknown 35.0
2111 Female, age 85, right hemisphere 34.3
2566 Female, age 72, unknown 33.7
Nucleus accumbens
nTPM: 35.0
2732 Male, age 80, right hemisphere 38.9
1783 Male, age 74, unknown 36.5
2286 Male, age 75, left hemisphere 36.4
1806 Female, age 85, left hemisphere 36.3
2824 Male, age 61, right hemisphere 35.0
1856 Female, age 91, right hemisphere 33.9
2698 Female, age 72, unknown 31.6
2391 Female, age 94, left hemisphere 31.2
Nucleus basalis of Meynert
nTPM: 34.9
2569 Male, age 61, both hemispheres 38.5
2484 Female, age 94, left hemisphere 35.6
2821 Male, age 75, both hemispheres 33.0
2393 Male, age 80, right hemisphere 32.8
Nucleus of the diagonal band
nTPM: 33.7
1979 Male, age 74, unknown 36.0
2775 Male, age 80, right hemisphere 34.9
1812 Female, age 91, both hemispheres 34.5
2029 Male, age 61, right hemisphere 31.9
2195 Female, age 85, both hemispheres 31.5
Olfactory tubercle
nTPM: 32.4
1998 Female, age 91, both hemispheres 33.3
1846 Male, age 80, right hemisphere 33.0
2487 Female, age 94, left hemisphere 31.9
2856 Male, age 75, right hemisphere 31.2
Putamen
nTPM: 34.1
2466 Female, age 79, unknown 37.5
1937 Female, age 91, right hemisphere 35.6
2482 Female, age 94, left hemisphere 35.0
2489 Female, age 72, unknown 34.2
2647 Male, age 75, left hemisphere 33.3
1838 Male, age 80, right hemisphere 32.2
1829 Male, age 74, unknown 30.7
Septal nuclei
nTPM: 33.2
1960 Male, age 74, unknown 36.3
2031 Female, age 72, unknown 35.0
2059 Female, age 85, both hemispheres 33.7
2009 Female, age 91, both hemispheres 33.1
2199 Male, age 80, right hemisphere 33.0
2394 Male, age 61, left hemisphere 31.7
2629 Female, age 94, right hemisphere 30.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 64.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 59.7
Samples: 246

Max nTPM: 129.1
Min nTPM: 23.6
Std nTPM: 14.9
Median nTPM: 58.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 129.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 119.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 107.9
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 100.9
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 99.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 95.6
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 93.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 92.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 91.4
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 89.9
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 89.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 64.2
Samples: 246

Max nTPM: 163.0
Min nTPM: 28.8
Std nTPM: 19.1
Median nTPM: 62.3
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 163.0
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 146.8
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 136.0
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 127.7
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 126.7
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 120.0
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 115.7
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 112.0
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 111.9
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 108.9
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 108.5
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Brain - Putamen (basal ganglia)
Average nTPM: 63.4
Samples: 205

Max nTPM: 125.2
Min nTPM: 26.6
Std nTPM: 13.4
Median nTPM: 63.1
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 125.2
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 101.2
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 98.9
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 96.9
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 92.6
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 92.0
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 91.7
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 88.6
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 86.6
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 86.2
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 85.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 24.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 23.0
FF:10164-103B2 76 years, female 23.0
Globus pallidus
Scaled Tags Per Million: 23.3
FF:10175-103C4 60 years, female 26.0
FF:10161-103A8 76 years, female 20.5
Nucleus accumbens
Scaled Tags Per Million: 17.2
FF:10037-101F1 23-56 years, mixed 17.2
Putamen
Scaled Tags Per Million: 24.2
FF:10176-103C5 60 years, female 24.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 12.1
Pig sample Sample description nTPM
Caudate
nTPM: 12.2
Samples: 4

Max nTPM: 14.8
Min nTPM: 9.2
Sample A Female 9.2
Sample B Female 14.8
Sample C Male 13.6
Sample D Male 11.0
Putamen
nTPM: 12.1
Samples: 4

Max nTPM: 14.2
Min nTPM: 10.7
Sample A Female 11.5
Sample B Female 11.8
Sample C Male 14.2
Sample D Male 10.7
Septum
nTPM: 10.1
Samples: 4

Max nTPM: 11.8
Min nTPM: 7.5
Sample A Female 11.8
Sample B Female 11.4
Sample C Male 9.5
Sample D Male 7.5
Ventral pallidum
nTPM: 10.9
Samples: 4

Max nTPM: 12.7
Min nTPM: 8.6
Sample A Female 8.6
Sample B Female 12.7
Sample C Male 11.7
Sample D Male 10.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 10.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 9.2
Samples: 4

Max nTPM: 11.2
Min nTPM: 7.3
Sample A Male 10.1
Sample B Male 11.2
Sample C Female 7.3
Sample D Female 8.0
Septum
nTPM: 9.6
Samples: 4

Max nTPM: 11.1
Min nTPM: 7.5
Sample A Male 11.1
Sample B Male 9.5
Sample C Female 10.2
Sample D Female 7.5
Ventral forebrain
nTPM: 10.5
Samples: 4

Max nTPM: 10.9
Min nTPM: 10.1
Sample A Male 10.5
Sample B Male 10.9
Sample C Female 10.1
Sample D Female 10.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
71763882 Antisense, RP_050921_02_G08, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
71763882 Antisense, RP_050921_02_G08, Mouse strain C57BL/6J (56 days, male) 0.0

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