MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:36.5 nTPM
HPA:36.5 nTPM
GTEx:58.6 nTPM
FANTOM5:27.0 Scaled Tags Per Million
Pig:10.9 nTPM
Mouse:7.3 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 36.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 34.3
2586 Male, age 75, left hemisphere 40.1
2828 Female, age 72, unknown 36.7
2411 Female, age 72, unknown 35.6
1870 Female, age 42, unknown 35.2
2019 Male, age 18, unknown 34.5
1827 Male, age 72, unknown 34.2
1833 Male, age 53, unknown 32.9
1830 Male, age 51, unknown 32.7
2666 Male, age 74, left hemisphere 31.5
2219 Male, age 76, both hemispheres 30.0
Dorsal raphe nucleus
nTPM: 36.0
2298 Female, age 72, unknown 41.7
2016 Female, age 72, unknown 35.7
2047 Male, age 72, unknown 34.5
2750 Male, age 76, both hemispheres 34.2
1828 Male, age 53, unknown 33.9
Inferior colliculus
nTPM: 34.4
2097 Female, age 72, unknown 38.1
1890 Male, age 53, unknown 33.8
1848 Female, age 42, unknown 33.5
2849 Male, age 72, unknown 32.3
Median raphe nucleus
nTPM: 32.8
2220 Male, age 76, midline 32.8
Pedunculopontine tegmental nucleus
nTPM: 32.5
2334 Male, age 80, both hemispheres 33.8
1921 Female, age 85, both hemispheres 32.4
2338 Male, age 61, both hemispheres 31.2
Periaquaductal grey, anterior
nTPM: 36.5
2502 Female, age 75, unknown 38.8
1795 Male, age 51, unknown 35.9
1947 Male, age 18, unknown 34.9
Periaquaductal grey, dorsal
nTPM: 34.2
1840 Male, age 53, unknown 36.5
1831 Male, age 72, unknown 33.9
2464 Female, age 72, unknown 33.8
2850 Male, age 76, both hemispheres 32.6
Periaquaductal grey, lateral
nTPM: 35.5
2140 Male, age 76, both hemispheres 36.2
2272 Male, age 74, both hemispheres 35.9
2053 Male, age 18, unknown 34.5
Pretectal area
nTPM: 34.4
2273 Male, age 74, both hemispheres 36.0
2825 Male, age 18, unknown 35.6
2224 Female, age 72, unknown 35.5
2316 Male, age 76, right hemisphere 35.5
2007 Male, age 72, unknown 35.0
1817 Female, age 42, unknown 34.2
1815 Male, age 53, unknown 33.9
2667 Female, age 75, unknown 33.9
1816 Male, age 51, unknown 33.7
2407 Male, age 75, both hemispheres 33.3
1944 Female, age 72, unknown 32.1
Red nucleus
nTPM: 35.7
2769 Male, age 72, unknown 38.2
2503 Female, age 72, unknown 38.0
1954 Female, age 42, unknown 37.3
2227 Male, age 72, unknown 37.0
1904 Male, age 53, unknown 36.3
1865 Male, age 51, unknown 35.7
2588 Male, age 74, left hemisphere 35.7
2785 Male, age 18, unknown 35.7
1821 Female, age 72, unknown 35.6
2725 Female, age 75, unknown 33.5
2823 Male, age 76, right hemisphere 33.0
2584 Male, age 75, left hemisphere 32.0
Substantia nigra
nTPM: 33.5
1851 Male, age 51, unknown 35.2
2409 Female, age 72, unknown 34.8
2583 Male, age 75, right hemisphere 34.7
2590 Female, age 75, unknown 34.4
1916 Female, age 42, unknown 33.5
2665 Male, age 74, both hemispheres 33.1
1889 Female, age 72, unknown 32.8
1941 Male, age 53, unknown 32.6
2699 Male, age 18, unknown 32.2
2241 Male, age 72, unknown 31.5
Superior colliculus
nTPM: 34.5
2261 Male, age 18, unknown 36.6
2664 Male, age 75, both hemispheres 36.2
1995 Male, age 72, unknown 36.1
1796 Male, age 53, unknown 34.9
1839 Male, age 51, unknown 34.0
2587 Male, age 74, left hemisphere 34.0
2668 Female, age 75, unknown 34.0
1913 Female, age 42, unknown 33.7
2087 Female, age 72, unknown 33.4
1895 Male, age 76, right hemisphere 32.1
Ventral tegmental area
nTPM: 34.2
1915 Female, age 42, unknown 35.9
2021 Male, age 53, unknown 35.6
1942 Male, age 51, unknown 35.1
2223 Female, age 72, unknown 33.5
2410 Female, age 72, unknown 33.5
2218 Male, age 76, both hemispheres 31.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 58.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 58.6
Samples: 139

Max nTPM: 110.2
Min nTPM: 26.2
Std nTPM: 17.1
Median nTPM: 55.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 110.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 105.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 103.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 97.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 97.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 93.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 91.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 89.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 87.2
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 87.0
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 85.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 27.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 27.0
FF:10158-103A5 76 years, female 27.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 10.9
Pig sample Sample description nTPM
Midbrain
nTPM: 10.7
Samples: 4

Max nTPM: 12.8
Min nTPM: 8.9
Sample A Female 12.8
Sample B Female 8.9
Sample C Male 10.7
Sample D Male 10.3
Periaqueductal gray
nTPM: 9.4
Samples: 3

Max nTPM: 10.0
Min nTPM: 8.8
Sample B Female 9.5
Sample C Male 10.0
Sample D Male 8.8
Substantia nigra
nTPM: 9.6
Samples: 4

Max nTPM: 12.1
Min nTPM: 7.5
Sample A Female 12.1
Sample B Female 10.1
Sample C Male 7.5
Sample D Male 8.7
Superior colliculi
nTPM: 10.9
Samples: 4

Max nTPM: 13.7
Min nTPM: 9.1
Sample A Female 13.7
Sample B Female 11.1
Sample C Male 9.1
Sample D Male 9.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 7.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 7.3
Samples: 4

Max nTPM: 9.0
Min nTPM: 4.9
Sample A Male 9.0
Sample B Male 6.4
Sample C Female 4.9
Sample D Female 8.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
71763882 Antisense, RP_050921_02_G08, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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