MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:81.7 nTPM
HPA:81.7 nTPM
GTEx:115.5 nTPM
FANTOM5:180.0 Scaled Tags Per Million

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 81.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 76.2
1870 Female, age 42, unknown 79.6
2411 Female, age 72, unknown 78.7
1830 Male, age 51, unknown 77.9
2019 Male, age 18, unknown 77.8
2828 Female, age 72, unknown 77.4
1827 Male, age 72, unknown 77.1
1833 Male, age 53, unknown 76.5
2219 Male, age 76, both hemispheres 74.9
2666 Male, age 74, left hemisphere 72.4
2586 Male, age 75, left hemisphere 69.4
Dorsal raphe nucleus
nTPM: 81.4
2298 Female, age 72, unknown 84.5
2750 Male, age 76, both hemispheres 81.6
2016 Female, age 72, unknown 81.5
1828 Male, age 53, unknown 80.3
2047 Male, age 72, unknown 79.4
Inferior colliculus
nTPM: 79.1
2097 Female, age 72, unknown 80.5
1848 Female, age 42, unknown 80.1
1890 Male, age 53, unknown 79.2
2849 Male, age 72, unknown 76.4
Median raphe nucleus
nTPM: 79.7
2220 Male, age 76, midline 79.7
Pedunculopontine tegmental nucleus
nTPM: 81.7
2334 Male, age 80, both hemispheres 82.0
2338 Male, age 61, both hemispheres 81.6
1921 Female, age 85, both hemispheres 81.4
Periaquaductal grey, anterior
nTPM: 80.2
1947 Male, age 18, unknown 83.1
2502 Female, age 75, unknown 80.9
1795 Male, age 51, unknown 76.5
Periaquaductal grey, dorsal
nTPM: 79.4
2850 Male, age 76, both hemispheres 81.7
2464 Female, age 72, unknown 80.7
1840 Male, age 53, unknown 79.3
1831 Male, age 72, unknown 76.0
Periaquaductal grey, lateral
nTPM: 79.0
2272 Male, age 74, both hemispheres 80.7
2140 Male, age 76, both hemispheres 78.8
2053 Male, age 18, unknown 77.6
Pretectal area
nTPM: 78.7
2224 Female, age 72, unknown 83.3
2273 Male, age 74, both hemispheres 81.8
2316 Male, age 76, right hemisphere 81.1
2825 Male, age 18, unknown 79.2
1944 Female, age 72, unknown 79.1
1816 Male, age 51, unknown 78.2
2667 Female, age 75, unknown 78.1
1815 Male, age 53, unknown 77.7
1817 Female, age 42, unknown 76.5
2007 Male, age 72, unknown 76.1
2407 Male, age 75, both hemispheres 74.2
Red nucleus
nTPM: 77.6
1821 Female, age 72, unknown 82.6
2503 Female, age 72, unknown 80.1
1865 Male, age 51, unknown 79.1
1904 Male, age 53, unknown 79.1
1954 Female, age 42, unknown 79.1
2823 Male, age 76, right hemisphere 78.6
2227 Male, age 72, unknown 78.4
2725 Female, age 75, unknown 78.3
2769 Male, age 72, unknown 77.9
2588 Male, age 74, left hemisphere 73.4
2785 Male, age 18, unknown 73.1
2584 Male, age 75, left hemisphere 71.8
Substantia nigra
nTPM: 79.9
2241 Male, age 72, unknown 86.2
1916 Female, age 42, unknown 82.9
1851 Male, age 51, unknown 82.6
2699 Male, age 18, unknown 81.5
1889 Female, age 72, unknown 81.4
1941 Male, age 53, unknown 78.9
2409 Female, age 72, unknown 78.4
2590 Female, age 75, unknown 77.8
2665 Male, age 74, both hemispheres 76.6
2583 Male, age 75, right hemisphere 73.2
Superior colliculus
nTPM: 77.7
1895 Male, age 76, right hemisphere 80.2
1913 Female, age 42, unknown 79.8
2087 Female, age 72, unknown 79.8
1995 Male, age 72, unknown 79.5
1796 Male, age 53, unknown 77.9
2668 Female, age 75, unknown 77.8
2587 Male, age 74, left hemisphere 77.1
2261 Male, age 18, unknown 76.9
1839 Male, age 51, unknown 76.3
2664 Male, age 75, both hemispheres 71.6
Ventral tegmental area
nTPM: 79.8
2410 Female, age 72, unknown 82.5
1915 Female, age 42, unknown 81.7
2223 Female, age 72, unknown 79.9
2021 Male, age 53, unknown 78.9
1942 Male, age 51, unknown 78.2
2218 Male, age 76, both hemispheres 77.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 115.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 115.5
Samples: 139

Max nTPM: 274.1
Min nTPM: 48.1
Std nTPM: 40.6
Median nTPM: 109.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 274.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 238.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 233.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 215.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 212.2
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 198.5
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 194.1
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 193.6
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 184.7
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 182.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 179.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 180.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 180.0
FF:10158-103A5 76 years, female 180.0

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The Human Protein Atlas

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