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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glandular cells: Not detected
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:305.6 nTPM
HPA:32.0 nTPM
GTEx:305.6 nTPM
FANTOM5:287.3 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA004337
Glandular cells Not detected



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 32.0
overview
Male, age 65
Small intestine sample 232
nTPM: 24
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 31.9
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 26.1
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 45.9

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 305.6
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 305.6
Samples: 187

Max nTPM: 1310.7
Min nTPM: 79.1
Std nTPM: 182.1
Median nTPM: 258.7
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 1310.7
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 1095.6
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 858.5
GTEX-1192X-2526-SM-59868 50-59 years, male 812.9
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 760.3
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 746.4
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 732.9
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 727.4
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 660.6
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 619.5
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 600.0
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 593.5
GTEX-13111-1426-SM-5DUW3 50-59 years, male 589.0
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 580.0
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 560.6
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 557.4
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 554.6
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 545.9
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 543.5
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 526.5
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 523.5
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 517.5
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 509.0
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 500.4
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 490.5
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 470.9
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 470.2
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 468.6
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 465.2
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 463.8
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 457.2
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 454.2
GTEX-117YX-0326-SM-5GICL 50-59 years, male 439.9
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 431.2
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 422.2
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 419.1
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 419.1
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 412.2
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 408.1
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 404.0
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 396.0
GTEX-183FY-1626-SM-793D8 20-29 years, male 389.9
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 388.9
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 386.8
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 382.7
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 380.0
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 379.3
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 376.3
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 369.4
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 367.1
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 366.3
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 362.2
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 356.4
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 355.6
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 354.2
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 352.2
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 349.7
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 342.6
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 341.7
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 330.3
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 325.9
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 323.8
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 323.7
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 322.0
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 321.2
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 320.3
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 320.1
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 318.2
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 317.2
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 316.6
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 315.5
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 314.8
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 313.7
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 312.1
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 308.6
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 307.2
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 305.6
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 304.4
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 303.0
GTEX-144GM-1026-SM-79OKU 20-29 years, male 302.6
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 301.7
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 301.5
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 300.4
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 298.3
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 290.7
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 288.5
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 280.8
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 279.2
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 274.8
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 273.3
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 268.1
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 262.1
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 262.1
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 258.7
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 258.7
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 253.3
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 251.7
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 249.7
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 248.0
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 247.0
GTEX-14PK6-1626-SM-6871I 70-79 years, female 246.3
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 245.4
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 244.5
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 241.3
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 241.0
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 239.4
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 237.6
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 237.4
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 235.7
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 235.2
GTEX-14PKU-1626-SM-6871C 40-49 years, female 234.6
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 232.7
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 231.1
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 223.1
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 222.8
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 222.3
GTEX-1C475-1426-SM-793CH 40-49 years, female 220.8
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 219.6
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 218.5
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 213.9
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 213.0
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 212.5
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 211.3
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 211.0
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 208.6
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 207.9
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 204.8
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 204.3
GTEX-13O61-1326-SM-5KM31 60-69 years, male 204.1
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 201.1
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 198.8
GTEX-YFCO-1326-SM-664NV 40-49 years, male 196.1
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 194.8
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 193.1
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 192.3
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 191.8
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 190.5
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 187.1
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 185.7
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 185.2
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 180.0
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 179.6
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 176.4
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 175.2
GTEX-13113-1226-SM-5EGHT 60-69 years, female 175.0
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 171.2
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 170.6
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 165.2
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 164.1
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 160.2
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 157.5
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 155.5
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 154.1
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 150.3
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 149.2
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 149.1
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 148.0
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 144.9
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 143.8
GTEX-ZTSS-0926-SM-59865 40-49 years, male 142.8
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 142.2
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 139.6
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 137.7
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 134.2
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 130.5
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 127.0
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 126.7
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 125.7
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 122.6
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 121.2
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 121.2
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 121.0
GTEX-111YS-1426-SM-5GID8 60-69 years, male 119.4
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 118.6
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 117.4
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 114.1
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 110.3
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 107.2
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 105.5
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 105.1
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 103.2
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 100.1
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 97.9
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 97.4
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 95.1
GTEX-1122O-1326-SM-5H11F 60-69 years, female 89.7
GTEX-14PN3-2026-SM-68729 60-69 years, female 79.1
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 287.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 287.3
FF:10024-101D6 15,40,85 years, mixed 287.3

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The Human Protein Atlas project is funded
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