MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:23.7 nTPM
HPA:23.7 nTPM
GTEx:22.0 nTPM
FANTOM5:32.3 Scaled Tags Per Million
Pig:16.7 nTPM
Mouse:96.4 nTPM
Allen mouse:8.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 23.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 21.0
2219 Male, age 76, both hemispheres 22.7
2411 Female, age 72, unknown 22.4
1870 Female, age 42, unknown 22.3
2019 Male, age 18, unknown 21.7
1827 Male, age 72, unknown 21.5
1833 Male, age 53, unknown 20.8
1830 Male, age 51, unknown 20.1
2828 Female, age 72, unknown 20.0
2666 Male, age 74, left hemisphere 19.5
2586 Male, age 75, left hemisphere 18.6
Dorsal raphe nucleus
nTPM: 22.6
2298 Female, age 72, unknown 24.9
2750 Male, age 76, both hemispheres 22.8
1828 Male, age 53, unknown 22.4
2047 Male, age 72, unknown 22.3
2016 Female, age 72, unknown 20.8
Inferior colliculus
nTPM: 21.3
2097 Female, age 72, unknown 22.2
1848 Female, age 42, unknown 21.7
1890 Male, age 53, unknown 21.5
2849 Male, age 72, unknown 19.9
Median raphe nucleus
nTPM: 22.7
2220 Male, age 76, midline 22.7
Pedunculopontine tegmental nucleus
nTPM: 21.9
1921 Female, age 85, both hemispheres 23.3
2334 Male, age 80, both hemispheres 22.6
2338 Male, age 61, both hemispheres 19.9
Periaquaductal grey, anterior
nTPM: 21.3
1947 Male, age 18, unknown 22.3
2502 Female, age 75, unknown 20.9
1795 Male, age 51, unknown 20.7
Periaquaductal grey, dorsal
nTPM: 20.4
1840 Male, age 53, unknown 21.4
2464 Female, age 72, unknown 20.8
1831 Male, age 72, unknown 19.8
2850 Male, age 76, both hemispheres 19.7
Periaquaductal grey, lateral
nTPM: 20.3
2272 Male, age 74, both hemispheres 21.3
2053 Male, age 18, unknown 20.1
2140 Male, age 76, both hemispheres 19.4
Pretectal area
nTPM: 22.0
2273 Male, age 74, both hemispheres 23.2
1816 Male, age 51, unknown 23.0
2667 Female, age 75, unknown 23.0
2007 Male, age 72, unknown 22.9
2224 Female, age 72, unknown 22.7
1817 Female, age 42, unknown 22.4
1944 Female, age 72, unknown 22.0
1815 Male, age 53, unknown 21.4
2825 Male, age 18, unknown 20.7
2407 Male, age 75, both hemispheres 20.4
2316 Male, age 76, right hemisphere 20.1
Red nucleus
nTPM: 21.3
1821 Female, age 72, unknown 24.4
2503 Female, age 72, unknown 22.0
2725 Female, age 75, unknown 22.0
2769 Male, age 72, unknown 21.3
1865 Male, age 51, unknown 21.2
1904 Male, age 53, unknown 21.2
1954 Female, age 42, unknown 21.1
2227 Male, age 72, unknown 21.1
2823 Male, age 76, right hemisphere 21.1
2785 Male, age 18, unknown 20.8
2588 Male, age 74, left hemisphere 20.2
2584 Male, age 75, left hemisphere 18.6
Substantia nigra
nTPM: 23.7
1916 Female, age 42, unknown 29.3
2241 Male, age 72, unknown 26.9
1851 Male, age 51, unknown 25.7
1941 Male, age 53, unknown 24.1
1889 Female, age 72, unknown 23.8
2409 Female, age 72, unknown 22.5
2699 Male, age 18, unknown 22.2
2590 Female, age 75, unknown 21.5
2665 Male, age 74, both hemispheres 21.1
2583 Male, age 75, right hemisphere 20.0
Superior colliculus
nTPM: 21.1
1895 Male, age 76, right hemisphere 22.9
2261 Male, age 18, unknown 22.0
2587 Male, age 74, left hemisphere 21.8
1796 Male, age 53, unknown 21.5
2668 Female, age 75, unknown 21.4
2087 Female, age 72, unknown 21.3
1839 Male, age 51, unknown 20.8
1913 Female, age 42, unknown 20.2
1995 Male, age 72, unknown 19.6
2664 Male, age 75, both hemispheres 19.2
Ventral tegmental area
nTPM: 22.8
2410 Female, age 72, unknown 25.1
1915 Female, age 42, unknown 24.8
2218 Male, age 76, both hemispheres 22.9
1942 Male, age 51, unknown 21.6
2223 Female, age 72, unknown 21.5
2021 Male, age 53, unknown 20.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 22.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 22.0
Samples: 139

Max nTPM: 43.8
Min nTPM: 13.0
Std nTPM: 5.4
Median nTPM: 20.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 43.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 40.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 40.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 37.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 37.3
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 34.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 33.1
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 33.1
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 31.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 31.3
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 31.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 32.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 32.3
FF:10158-103A5 76 years, female 32.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 16.7
Pig sample Sample description nTPM
Midbrain
nTPM: 16.4
Samples: 4

Max nTPM: 19.7
Min nTPM: 14.4
Sample A Female 19.7
Sample B Female 16.0
Sample C Male 14.4
Sample D Male 15.3
Periaqueductal gray
nTPM: 15.1
Samples: 3

Max nTPM: 15.5
Min nTPM: 14.5
Sample B Female 15.5
Sample C Male 15.4
Sample D Male 14.5
Substantia nigra
nTPM: 16.7
Samples: 4

Max nTPM: 18.5
Min nTPM: 15.1
Sample A Female 18.5
Sample B Female 15.1
Sample C Male 16.6
Sample D Male 16.6
Superior colliculi
nTPM: 15.5
Samples: 4

Max nTPM: 17.1
Min nTPM: 14.3
Sample A Female 17.1
Sample B Female 14.3
Sample C Male 15.7
Sample D Male 14.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 96.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 96.5
Samples: 4

Max nTPM: 102.0
Min nTPM: 91.7
Sample A Male 102.0
Sample B Male 93.7
Sample C Female 91.7
Sample D Female 98.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.4
68861649 Antisense, RP_050224_02_F09, Mouse strain C57BL/6J (56 days, male) 8.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.