MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:221.6 nTPM
HPA:221.6 nTPM
GTEx:310.9 nTPM
FANTOM5:153.8 Scaled Tags Per Million
Pig:416.5 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 221.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 179.6
1827 Male, age 72, unknown 198.6
1870 Female, age 42, unknown 192.4
2219 Male, age 76, both hemispheres 189.8
2666 Male, age 74, left hemisphere 189.5
2019 Male, age 18, unknown 181.3
1833 Male, age 53, unknown 179.5
2411 Female, age 72, unknown 174.1
1830 Male, age 51, unknown 171.4
2828 Female, age 72, unknown 170.2
2586 Male, age 75, left hemisphere 149.7
Dorsal raphe nucleus
nTPM: 186.3
1828 Male, age 53, unknown 199.0
2750 Male, age 76, both hemispheres 191.8
2298 Female, age 72, unknown 187.0
2047 Male, age 72, unknown 185.6
2016 Female, age 72, unknown 167.9
Inferior colliculus
nTPM: 186.0
2097 Female, age 72, unknown 195.3
1890 Male, age 53, unknown 184.3
2849 Male, age 72, unknown 184.1
1848 Female, age 42, unknown 180.2
Median raphe nucleus
nTPM: 221.6
2220 Male, age 76, midline 221.6
Pedunculopontine tegmental nucleus
nTPM: 211.3
2334 Male, age 80, both hemispheres 218.3
1921 Female, age 85, both hemispheres 209.4
2338 Male, age 61, both hemispheres 206.3
Periaquaductal grey, anterior
nTPM: 183.1
1947 Male, age 18, unknown 204.7
1795 Male, age 51, unknown 178.8
2502 Female, age 75, unknown 165.8
Periaquaductal grey, dorsal
nTPM: 176.1
2850 Male, age 76, both hemispheres 189.5
1831 Male, age 72, unknown 185.7
1840 Male, age 53, unknown 178.0
2464 Female, age 72, unknown 151.3
Periaquaductal grey, lateral
nTPM: 165.1
2272 Male, age 74, both hemispheres 169.0
2053 Male, age 18, unknown 168.7
2140 Male, age 76, both hemispheres 157.6
Pretectal area
nTPM: 196.7
1817 Female, age 42, unknown 231.7
1944 Female, age 72, unknown 225.0
1816 Male, age 51, unknown 219.2
2007 Male, age 72, unknown 213.8
1815 Male, age 53, unknown 207.2
2667 Female, age 75, unknown 187.9
2224 Female, age 72, unknown 185.9
2825 Male, age 18, unknown 178.3
2273 Male, age 74, both hemispheres 177.1
2407 Male, age 75, both hemispheres 174.2
2316 Male, age 76, right hemisphere 163.3
Red nucleus
nTPM: 177.3
1821 Female, age 72, unknown 215.2
2725 Female, age 75, unknown 209.0
2503 Female, age 72, unknown 182.2
1954 Female, age 42, unknown 178.8
2785 Male, age 18, unknown 177.0
2584 Male, age 75, left hemisphere 174.0
2823 Male, age 76, right hemisphere 173.6
2588 Male, age 74, left hemisphere 167.7
1865 Male, age 51, unknown 165.6
2227 Male, age 72, unknown 162.3
2769 Male, age 72, unknown 162.0
1904 Male, age 53, unknown 159.7
Substantia nigra
nTPM: 197.3
1916 Female, age 42, unknown 231.7
1889 Female, age 72, unknown 215.6
1941 Male, age 53, unknown 207.6
2241 Male, age 72, unknown 207.5
1851 Male, age 51, unknown 202.3
2699 Male, age 18, unknown 191.9
2665 Male, age 74, both hemispheres 189.4
2409 Female, age 72, unknown 183.6
2583 Male, age 75, right hemisphere 176.4
2590 Female, age 75, unknown 167.2
Superior colliculus
nTPM: 176.0
2668 Female, age 75, unknown 198.6
2587 Male, age 74, left hemisphere 191.5
1895 Male, age 76, right hemisphere 190.1
2087 Female, age 72, unknown 188.1
1839 Male, age 51, unknown 179.6
1796 Male, age 53, unknown 177.1
2261 Male, age 18, unknown 167.9
1913 Female, age 42, unknown 163.4
1995 Male, age 72, unknown 155.3
2664 Male, age 75, both hemispheres 148.3
Ventral tegmental area
nTPM: 188.2
2218 Male, age 76, both hemispheres 212.3
1915 Female, age 42, unknown 208.8
2410 Female, age 72, unknown 180.2
1942 Male, age 51, unknown 179.8
2223 Female, age 72, unknown 179.0
2021 Male, age 53, unknown 169.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 310.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 310.9
Samples: 139

Max nTPM: 669.2
Min nTPM: 188.7
Std nTPM: 88.5
Median nTPM: 290.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 669.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 650.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 602.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 580.8
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 511.1
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 493.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 486.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 468.4
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 449.1
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 445.1
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 436.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 153.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 153.8
FF:10158-103A5 76 years, female 153.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 416.5
Pig sample Sample description nTPM
Midbrain
nTPM: 370.1
Samples: 4

Max nTPM: 404.2
Min nTPM: 316.8
Sample A Female 316.8
Sample B Female 371.3
Sample C Male 404.2
Sample D Male 387.9
Periaqueductal gray
nTPM: 309.3
Samples: 3

Max nTPM: 352.8
Min nTPM: 280.4
Sample B Female 294.8
Sample C Male 352.8
Sample D Male 280.4
Substantia nigra
nTPM: 359.6
Samples: 4

Max nTPM: 476.3
Min nTPM: 228.5
Sample A Female 476.3
Sample B Female 322.8
Sample C Male 410.8
Sample D Male 228.5
Superior colliculi
nTPM: 416.5
Samples: 4

Max nTPM: 491.5
Min nTPM: 298.2
Sample A Female 491.5
Sample B Female 298.2
Sample C Male 486.7
Sample D Male 389.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
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