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ATP6V0C
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  • ATP6V0C
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:150.2 nTPM
HPA:150.2 nTPM
GTEx:376.2 nTPM
FANTOM5:1099.5 Scaled Tags Per Million
Pig:292.9 nTPM
Mouse:1542.5 nTPM
Allen mouse:30.0 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max nTPM 150.2
Sample id Sample description nTPM
Amygdala
nTPM: 86.9
2814 Male, age 76, right hemisphere 147.6
1987 Female, age 91, left hemisphere 98.3
2517 Female, age 94, left hemisphere 82.7
2514 Male, age 75, right hemisphere 61.8
2695 Female, age 67, right hemisphere 43.9
Basal amygdala
nTPM: 109.2
2243 Female, age 91, right hemisphere 176.6
2685 Female, age 94, left hemisphere 136.1
2110 Male, age 80, left hemisphere 126.4
1955 Male, age 76, both hemispheres 119.5
2609 Male, age 75, right hemisphere 76.6
2827 Female, age 67, right hemisphere 20.1
Central amygdala
nTPM: 107.2
2826 Female, age 94, left hemisphere 143.1
2239 Male, age 80, left hemisphere 135.2
1905 Male, age 76, both hemispheres 118.2
2701 Female, age 91, right hemisphere 99.7
2515 Male, age 75, right hemisphere 40.0
Corticomedial amygdala
nTPM: 97.2
2829 Male, age 80, left hemisphere 163.8
2242 Female, age 91, right hemisphere 159.2
2429 Female, age 94, left hemisphere 90.7
2240 Male, age 76, both hemispheres 84.6
2535 Female, age 67, right hemisphere 52.3
2428 Male, age 75, right hemisphere 32.4
Lateral amygdala
nTPM: 80.1
2534 Female, age 94, left hemisphere 178.2
1883 Male, age 76, both hemispheres 102.0
2255 Female, age 91, right hemisphere 93.3
2256 Male, age 80, left hemisphere 57.4
2516 Male, age 75, right hemisphere 49.5
2830 Female, age 67, right hemisphere 0.0
Stria terminalis, bed nucleus
nTPM: 150.2
1974 Female, age 91, both hemispheres 204.6
2486 Female, age 94, both hemispheres 126.6
2201 Male, age 74, unknown 119.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 376.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 376.2
Samples: 152

Max nTPM: 892.2
Min nTPM: 148.9
Std nTPM: 142.3
Median nTPM: 347.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 892.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 791.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 785.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 681.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 678.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 664.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 656.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 654.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 653.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 646.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 624.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 604.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 598.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 587.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 567.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 561.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 559.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 556.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 556.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 544.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 542.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 542.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 541.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 540.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 538.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 536.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 535.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 531.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 529.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 511.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 486.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 476.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 475.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 474.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 472.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 468.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 467.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 465.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 464.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 446.4
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 440.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 440.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 436.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 435.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 427.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 426.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 424.9
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 421.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 419.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 417.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 416.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 412.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 405.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 403.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 399.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 397.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 395.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 394.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 387.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 386.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 384.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 381.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 380.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 372.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 372.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 370.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 367.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 366.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 365.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 361.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 360.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 357.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 355.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 354.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 354.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 347.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 346.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 340.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 338.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 337.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 335.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 333.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 329.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 325.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 323.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 323.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 321.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 320.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 315.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 309.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 309.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 308.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 307.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 303.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 301.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 301.2
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 299.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 298.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 296.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 294.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 292.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 291.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 290.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 288.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 287.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 284.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 281.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 281.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 279.7
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 277.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 274.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 274.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 273.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 269.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 267.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 265.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 261.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 260.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 257.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 257.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 257.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 256.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 255.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 253.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 252.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 249.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 248.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 244.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 242.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 241.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 238.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 238.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 237.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 227.4
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 227.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 222.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 221.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 219.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 215.4
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 214.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 209.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 209.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 203.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 201.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 199.8
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 194.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 193.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 177.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 174.4
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 164.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 155.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 148.9
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 1099.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 1099.5
FF:10151-102I7 76 years, female 1099.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 292.9
Pig sample Sample description nTPM
Amygdala
nTPM: 292.9
Samples: 4

Max nTPM: 461.2
Min nTPM: 195.6
Sample A Female 461.2
Sample B Female 195.6
Sample C Male 248.7
Sample D Male 266.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1542.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 1542.5
Samples: 4

Max nTPM: 1674.9
Min nTPM: 1479.9
Sample A Male 1674.9
Sample B Male 1479.9
Sample C Female 1523.3
Sample D Female 1491.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 30.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 30.0
69526976 Antisense, RP_050421_02_A08, Mouse strain C57BL/6J (56 days, male) 30.5
74881559 Antisense, RP_060315_04_C11, Mouse strain C57BL/6J (56 days, male) 29.5

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