MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:139.7 nTPM
HPA:139.7 nTPM
GTEx:331.1 nTPM
FANTOM5:520.7 Scaled Tags Per Million
Pig:395.6 nTPM
Mouse:781.9 nTPM
Allen mouse:21.6 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 139.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 62.7
2666 Male, age 74, left hemisphere 107.3
1827 Male, age 72, unknown 93.1
2219 Male, age 76, both hemispheres 82.1
2586 Male, age 75, left hemisphere 65.5
2828 Female, age 72, unknown 64.2
1870 Female, age 42, unknown 60.7
2411 Female, age 72, unknown 55.3
1833 Male, age 53, unknown 39.8
2019 Male, age 18, unknown 34.6
1830 Male, age 51, unknown 24.7
Dorsal raphe nucleus
nTPM: 61.5
2298 Female, age 72, unknown 102.7
2750 Male, age 76, both hemispheres 70.5
2047 Male, age 72, unknown 70.4
1828 Male, age 53, unknown 64.1
2016 Female, age 72, unknown 0.0
Inferior colliculus
nTPM: 62.1
2097 Female, age 72, unknown 86.6
2849 Male, age 72, unknown 66.5
1848 Female, age 42, unknown 52.4
1890 Male, age 53, unknown 43.0
Median raphe nucleus
nTPM: 139.7
2220 Male, age 76, midline 139.7
Pedunculopontine tegmental nucleus
nTPM: 85.5
2334 Male, age 80, both hemispheres 102.2
1921 Female, age 85, both hemispheres 86.4
2338 Male, age 61, both hemispheres 67.7
Periaquaductal grey, anterior
nTPM: 92.4
1795 Male, age 51, unknown 126.0
1947 Male, age 18, unknown 102.4
2502 Female, age 75, unknown 48.8
Periaquaductal grey, dorsal
nTPM: 49.6
2850 Male, age 76, both hemispheres 66.2
1831 Male, age 72, unknown 64.0
1840 Male, age 53, unknown 38.9
2464 Female, age 72, unknown 29.1
Periaquaductal grey, lateral
nTPM: 39.1
2272 Male, age 74, both hemispheres 55.2
2053 Male, age 18, unknown 38.6
2140 Male, age 76, both hemispheres 23.6
Pretectal area
nTPM: 93.8
1816 Male, age 51, unknown 164.8
1817 Female, age 42, unknown 158.3
1944 Female, age 72, unknown 142.3
2007 Male, age 72, unknown 139.6
1815 Male, age 53, unknown 115.1
2667 Female, age 75, unknown 105.1
2224 Female, age 72, unknown 88.3
2825 Male, age 18, unknown 66.4
2273 Male, age 74, both hemispheres 29.0
2407 Male, age 75, both hemispheres 13.6
2316 Male, age 76, right hemisphere 8.8
Red nucleus
nTPM: 44.9
2584 Male, age 75, left hemisphere 70.2
2725 Female, age 75, unknown 67.8
2785 Male, age 18, unknown 67.4
1821 Female, age 72, unknown 60.5
2503 Female, age 72, unknown 42.8
1954 Female, age 42, unknown 42.0
2769 Male, age 72, unknown 37.8
2227 Male, age 72, unknown 37.3
2823 Male, age 76, right hemisphere 34.8
1904 Male, age 53, unknown 32.3
1865 Male, age 51, unknown 26.5
2588 Male, age 74, left hemisphere 19.7
Substantia nigra
nTPM: 82.6
1916 Female, age 42, unknown 151.9
1941 Male, age 53, unknown 122.9
1889 Female, age 72, unknown 121.6
1851 Male, age 51, unknown 96.2
2665 Male, age 74, both hemispheres 95.3
2583 Male, age 75, right hemisphere 72.7
2699 Male, age 18, unknown 64.2
2241 Male, age 72, unknown 34.3
2409 Female, age 72, unknown 33.6
2590 Female, age 75, unknown 33.3
Superior colliculus
nTPM: 67.4
1796 Male, age 53, unknown 119.3
2668 Female, age 75, unknown 117.8
2087 Female, age 72, unknown 100.3
2261 Male, age 18, unknown 93.2
2587 Male, age 74, left hemisphere 60.8
1913 Female, age 42, unknown 47.4
1839 Male, age 51, unknown 46.9
1895 Male, age 76, right hemisphere 44.9
1995 Male, age 72, unknown 24.6
2664 Male, age 75, both hemispheres 18.9
Ventral tegmental area
nTPM: 88.4
2218 Male, age 76, both hemispheres 144.8
1915 Female, age 42, unknown 111.7
2410 Female, age 72, unknown 95.7
2223 Female, age 72, unknown 80.7
1942 Male, age 51, unknown 59.8
2021 Male, age 53, unknown 38.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 331.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 331.1
Samples: 139

Max nTPM: 788.8
Min nTPM: 117.2
Std nTPM: 143.2
Median nTPM: 289.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 788.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 766.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 759.8
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 753.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 725.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 672.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 625.5
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 620.2
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 610.7
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 596.1
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 565.0
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 520.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 520.7
FF:10158-103A5 76 years, female 520.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 395.6
Pig sample Sample description nTPM
Midbrain
nTPM: 375.5
Samples: 4

Max nTPM: 532.6
Min nTPM: 290.7
Sample A Female 300.2
Sample B Female 290.7
Sample C Male 532.6
Sample D Male 378.3
Periaqueductal gray
nTPM: 288.6
Samples: 3

Max nTPM: 370.5
Min nTPM: 244.2
Sample B Female 251.2
Sample C Male 370.5
Sample D Male 244.2
Substantia nigra
nTPM: 353.7
Samples: 4

Max nTPM: 479.8
Min nTPM: 208.8
Sample A Female 466.9
Sample B Female 259.3
Sample C Male 479.8
Sample D Male 208.8
Superior colliculi
nTPM: 395.6
Samples: 4

Max nTPM: 473.5
Min nTPM: 269.8
Sample A Female 457.7
Sample B Female 269.8
Sample C Male 473.5
Sample D Male 381.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 781.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 781.9
Samples: 4

Max nTPM: 853.0
Min nTPM: 729.9
Sample A Male 853.0
Sample B Male 749.2
Sample C Female 729.9
Sample D Female 795.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 21.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 21.6
74881559 Antisense, RP_060315_04_C11, Mouse strain C57BL/6J (56 days, male) 21.6
69526976 Antisense, RP_050421_02_A08, Mouse strain C57BL/6J (56 days, male) 21.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.