BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:176.0 nTPM
HPA:176.0 nTPM
GTEx:400.5 nTPM
FANTOM5:1730.8 Scaled Tags Per Million
Pig:362.3 nTPM
Mouse:1603.5 nTPM
Allen mouse:21.2 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 176.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 90.3
2288 Male, age 75, left hemisphere 135.8
1781 Male, age 74, unknown 130.1
2846 Female, age 79, unknown 114.3
2290 Female, age 72, unknown 99.8
1857 Female, age 85, left hemisphere 86.5
2481 Female, age 94, left hemisphere 58.2
1854 Male, age 80, left hemisphere 55.2
2289 Male, age 61, right hemisphere 42.2
Claustrum
nTPM: 131.8
2198 Male, age 80, both hemispheres 183.5
2284 Female, age 91, both hemispheres 160.0
2568 Male, age 61, both hemispheres 153.6
1956 Male, age 74, unknown 142.2
2196 Female, age 79, unknown 122.5
2645 Female, age 72, unknown 119.4
2491 Male, age 75, both hemispheres 118.1
2292 Female, age 85, both hemispheres 117.5
2392 Female, age 94, both hemispheres 69.8
Globus pallidus, externus
nTPM: 34.2
2772 Female, age 79, unknown 77.3
2395 Male, age 75, both hemispheres 63.3
1996 Male, age 80, right hemisphere 22.1
2646 Male, age 61, right hemisphere 8.4
2567 Female, age 72, unknown 0.0
Globus pallidus, internus
nTPM: 35.7
2287 Male, age 75, right hemisphere 118.1
2483 Female, age 94, right hemisphere 46.2
1818 Male, age 74, unknown 44.3
2778 Female, age 91, both hemispheres 24.6
2037 Male, age 80, right hemisphere 11.3
2566 Female, age 72, unknown 5.2
2111 Female, age 85, right hemisphere 0.0
Nucleus accumbens
nTPM: 90.7
1856 Female, age 91, right hemisphere 154.6
2286 Male, age 75, left hemisphere 126.6
2698 Female, age 72, unknown 119.5
1806 Female, age 85, left hemisphere 112.1
1783 Male, age 74, unknown 109.9
2824 Male, age 61, right hemisphere 61.3
2391 Female, age 94, left hemisphere 23.6
2732 Male, age 80, right hemisphere 17.8
Nucleus basalis of Meynert
nTPM: 32.0
2821 Male, age 75, both hemispheres 69.5
2484 Female, age 94, left hemisphere 40.9
2393 Male, age 80, right hemisphere 12.1
2569 Male, age 61, both hemispheres 5.6
Nucleus of the diagonal band
nTPM: 176.0
2195 Female, age 85, both hemispheres 217.4
2775 Male, age 80, right hemisphere 194.5
1812 Female, age 91, both hemispheres 192.5
2029 Male, age 61, right hemisphere 147.1
1979 Male, age 74, unknown 128.6
Olfactory tubercle
nTPM: 158.2
1998 Female, age 91, both hemispheres 197.6
1846 Male, age 80, right hemisphere 158.5
2856 Male, age 75, right hemisphere 139.4
2487 Female, age 94, left hemisphere 137.3
Putamen
nTPM: 61.2
1838 Male, age 80, right hemisphere 89.9
1937 Female, age 91, right hemisphere 88.1
2466 Female, age 79, unknown 86.8
1829 Male, age 74, unknown 62.9
2482 Female, age 94, left hemisphere 60.1
2647 Male, age 75, left hemisphere 39.4
2489 Female, age 72, unknown 1.6
Septal nuclei
nTPM: 139.1
1960 Male, age 74, unknown 241.1
2031 Female, age 72, unknown 206.3
2629 Female, age 94, right hemisphere 164.8
2009 Female, age 91, both hemispheres 142.3
2059 Female, age 85, both hemispheres 105.6
2199 Male, age 80, right hemisphere 59.1
2394 Male, age 61, left hemisphere 54.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 400.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 339.1
Samples: 246

Max nTPM: 713.4
Min nTPM: 135.4
Std nTPM: 116.5
Median nTPM: 329.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 713.4
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 676.9
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 667.4
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 630.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 626.1
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 601.1
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 599.7
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 587.5
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 569.2
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 565.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 557.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 400.5
Samples: 246

Max nTPM: 743.2
Min nTPM: 78.3
Std nTPM: 122.8
Median nTPM: 401.9
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 743.2
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 720.6
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 707.3
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 701.7
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 670.4
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 649.1
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 633.2
GTEX-1C6VR-0011-R6a-SM-7MXU8 60-69 years, male 621.7
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 620.5
GTEX-1OJC4-0011-R6a-SM-EXOIM 50-59 years, female 618.8
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 617.6
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Brain - Putamen (basal ganglia)
Average nTPM: 344.9
Samples: 205

Max nTPM: 704.4
Min nTPM: 132.4
Std nTPM: 111.9
Median nTPM: 330.2
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 704.4
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 673.1
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 669.6
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 617.3
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 607.0
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 602.1
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 598.2
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 579.4
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 574.7
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 567.9
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 558.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 1730.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 1043.3
FF:10164-103B2 76 years, female 1043.3
Globus pallidus
Scaled Tags Per Million: 710.6
FF:10175-103C4 60 years, female 879.3
FF:10161-103A8 76 years, female 542.0
Nucleus accumbens
Scaled Tags Per Million: 1507.8
FF:10037-101F1 23-56 years, mixed 1507.8
Putamen
Scaled Tags Per Million: 1730.8
FF:10176-103C5 60 years, female 1730.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 362.3
Pig sample Sample description nTPM
Caudate
nTPM: 351.3
Samples: 4

Max nTPM: 457.0
Min nTPM: 279.1
Sample A Female 279.1
Sample B Female 361.3
Sample C Male 457.0
Sample D Male 307.9
Putamen
nTPM: 362.3
Samples: 4

Max nTPM: 473.8
Min nTPM: 247.8
Sample A Female 247.8
Sample B Female 299.1
Sample C Male 473.8
Sample D Male 428.4
Septum
nTPM: 339.4
Samples: 4

Max nTPM: 413.6
Min nTPM: 289.8
Sample A Female 289.8
Sample B Female 295.9
Sample C Male 413.6
Sample D Male 358.2
Ventral pallidum
nTPM: 320.7
Samples: 4

Max nTPM: 436.3
Min nTPM: 276.3
Sample A Female 278.2
Sample B Female 292.1
Sample C Male 436.3
Sample D Male 276.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 1603.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 1107.0
Samples: 4

Max nTPM: 1233.2
Min nTPM: 983.0
Sample A Male 1077.8
Sample B Male 1233.2
Sample C Female 983.0
Sample D Female 1133.8
Septum
nTPM: 1603.5
Samples: 4

Max nTPM: 1781.2
Min nTPM: 1328.0
Sample A Male 1584.2
Sample B Male 1781.2
Sample C Female 1720.4
Sample D Female 1328.0
Ventral forebrain
nTPM: 1453.1
Samples: 4

Max nTPM: 1775.9
Min nTPM: 1317.3
Sample A Male 1357.1
Sample B Male 1362.0
Sample C Female 1775.9
Sample D Female 1317.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 21.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 21.2
74881559 Antisense, RP_060315_04_C11, Mouse strain C57BL/6J (56 days, male) 21.5
69526976 Antisense, RP_050421_02_A08, Mouse strain C57BL/6J (56 days, male) 20.9
Pallidum
Expression energy: 20.2
74881559 Antisense, RP_060315_04_C11, Mouse strain C57BL/6J (56 days, male) 21.0
69526976 Antisense, RP_050421_02_A08, Mouse strain C57BL/6J (56 days, male) 19.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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