MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:295.6 nTPM
HPA:295.6 nTPM
GTEx:155.4 nTPM
FANTOM5:287.5 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 295.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 281.4
2666 Male, age 74, left hemisphere 309.7
2828 Female, age 72, unknown 291.3
1870 Female, age 42, unknown 287.8
2019 Male, age 18, unknown 285.2
1830 Male, age 51, unknown 283.2
1833 Male, age 53, unknown 282.0
2411 Female, age 72, unknown 274.1
1827 Male, age 72, unknown 273.5
2586 Male, age 75, left hemisphere 265.5
2219 Male, age 76, both hemispheres 261.6
Dorsal raphe nucleus
nTPM: 281.7
1828 Male, age 53, unknown 291.6
2750 Male, age 76, both hemispheres 286.6
2298 Female, age 72, unknown 279.8
2016 Female, age 72, unknown 278.3
2047 Male, age 72, unknown 272.4
Inferior colliculus
nTPM: 278.8
1890 Male, age 53, unknown 280.8
2097 Female, age 72, unknown 279.5
1848 Female, age 42, unknown 278.3
2849 Male, age 72, unknown 276.6
Median raphe nucleus
nTPM: 290.4
2220 Male, age 76, midline 290.4
Pedunculopontine tegmental nucleus
nTPM: 295.6
2338 Male, age 61, both hemispheres 316.8
2334 Male, age 80, both hemispheres 293.6
1921 Female, age 85, both hemispheres 276.5
Periaquaductal grey, anterior
nTPM: 286.2
2502 Female, age 75, unknown 292.2
1947 Male, age 18, unknown 288.8
1795 Male, age 51, unknown 277.7
Periaquaductal grey, dorsal
nTPM: 276.1
2850 Male, age 76, both hemispheres 281.6
1831 Male, age 72, unknown 281.5
2464 Female, age 72, unknown 277.1
1840 Male, age 53, unknown 264.2
Periaquaductal grey, lateral
nTPM: 282.1
2272 Male, age 74, both hemispheres 290.1
2053 Male, age 18, unknown 281.3
2140 Male, age 76, both hemispheres 274.9
Pretectal area
nTPM: 279.3
1817 Female, age 42, unknown 288.6
2667 Female, age 75, unknown 285.5
1944 Female, age 72, unknown 284.2
2007 Male, age 72, unknown 280.7
1815 Male, age 53, unknown 279.8
2316 Male, age 76, right hemisphere 278.9
2224 Female, age 72, unknown 277.8
1816 Male, age 51, unknown 277.3
2825 Male, age 18, unknown 276.4
2273 Male, age 74, both hemispheres 276.2
2407 Male, age 75, both hemispheres 267.0
Red nucleus
nTPM: 291.9
1954 Female, age 42, unknown 309.2
1821 Female, age 72, unknown 299.8
1904 Male, age 53, unknown 296.2
2769 Male, age 72, unknown 295.4
2227 Male, age 72, unknown 292.7
2503 Female, age 72, unknown 292.7
2823 Male, age 76, right hemisphere 292.1
1865 Male, age 51, unknown 291.1
2588 Male, age 74, left hemisphere 290.6
2785 Male, age 18, unknown 290.0
2725 Female, age 75, unknown 281.5
2584 Male, age 75, left hemisphere 271.9
Substantia nigra
nTPM: 283.3
2665 Male, age 74, both hemispheres 312.1
1851 Male, age 51, unknown 290.2
2699 Male, age 18, unknown 287.1
1889 Female, age 72, unknown 285.5
1916 Female, age 42, unknown 281.7
2590 Female, age 75, unknown 279.7
2409 Female, age 72, unknown 278.2
1941 Male, age 53, unknown 277.9
2241 Male, age 72, unknown 276.1
2583 Male, age 75, right hemisphere 264.8
Superior colliculus
nTPM: 279.2
1995 Male, age 72, unknown 290.6
2087 Female, age 72, unknown 287.7
2587 Male, age 74, left hemisphere 287.7
1796 Male, age 53, unknown 283.9
1913 Female, age 42, unknown 279.9
1839 Male, age 51, unknown 277.3
2668 Female, age 75, unknown 277.1
1895 Male, age 76, right hemisphere 272.0
2261 Male, age 18, unknown 270.4
2664 Male, age 75, both hemispheres 265.1
Ventral tegmental area
nTPM: 287.1
1915 Female, age 42, unknown 294.6
2218 Male, age 76, both hemispheres 293.8
2223 Female, age 72, unknown 290.0
1942 Male, age 51, unknown 285.6
2021 Male, age 53, unknown 281.5
2410 Female, age 72, unknown 277.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 155.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 155.4
Samples: 139

Max nTPM: 760.2
Min nTPM: 28.5
Std nTPM: 105.3
Median nTPM: 130.5
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 760.2
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 562.0
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 516.3
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 463.8
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 437.0
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 425.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 402.3
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 314.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 293.7
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 291.2
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 281.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 287.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 287.5
FF:10158-103A5 76 years, female 287.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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