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RPS23
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BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Pons
PONS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:1137.0 nTPM
HPA:1137.0 nTPM
FANTOM5:384.0 Scaled Tags Per Million
Pig:0.0 nTPM

PONS - HPA Brain RNA-seq
Max nTPM 1137.0
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 1100.4
2188 Female, age 91, both hemispheres 1135.1
2090 Male, age 80, both hemispheres 1112.3
2301 Female, age 85, both hemispheres 1077.5
1984 Male, age 76, both hemispheres 1076.9
Dorsal cochlear nucleus
nTPM: 1106.9
2802 Male, age 74, right hemisphere 1141.9
2370 Male, age 61, both hemispheres 1120.4
2187 Female, age 91, both hemispheres 1116.7
2378 Male, age 80, both hemispheres 1086.6
2058 Male, age 76, both hemispheres 1069.1
Dorsal tegmental nucleus
nTPM: 1093.1
2083 Male, age 80, both hemispheres 1124.3
2326 Male, age 74, both hemispheres 1104.2
2358 Male, age 61, both hemispheres 1079.2
1936 Male, age 76, left hemisphere 1064.7
Dorsolateral tegmental area
nTPM: 1098.8
2654 Male, age 80, both hemispheres 1155.5
2751 Female, age 85, both hemispheres 1103.3
2337 Male, age 61, both hemispheres 1093.8
2360 Male, age 74, both hemispheres 1078.9
2141 Male, age 76, both hemispheres 1062.7
Kolliker-Fuse nucleus
nTPM: 1103.0
2793 Female, age 91, left hemisphere 1113.3
2315 Male, age 76, right hemisphere 1107.2
2163 Male, age 80, both hemispheres 1088.5
Lateral lemniscal nuclei
nTPM: 1066.2
2746 Female, age 85, left hemisphere 1083.4
2169 Male, age 76, both hemispheres 1082.4
2320 Female, age 91, left hemisphere 1071.9
2453 Male, age 74, right hemisphere 1066.0
2036 Male, age 80, both hemispheres 1027.4
Lateral parabrachial nucleus
nTPM: 1110.5
2792 Male, age 76, both hemispheres 1136.2
2013 Male, age 80, both hemispheres 1134.0
2139 Female, age 85, right hemisphere 1106.6
2790 Male, age 61, both hemispheres 1065.4
Lateral vestibular nucleus
nTPM: 1077.2
2311 Male, age 80, both hemispheres 1091.8
2184 Male, age 76, both hemispheres 1062.6
Locus coeruleus
nTPM: 1068.2
2123 Female, age 91, both hemispheres 1087.5
2162 Male, age 80, both hemispheres 1080.6
2720 Male, age 74, both hemispheres 1077.1
2317 Female, age 72, unknown 1071.6
2014 Male, age 55, unknown 1063.0
1980 Male, age 76, both hemispheres 1053.2
2788 Male, age 74, unknown 1044.4
Medial olivary nucleus
nTPM: 1137.0
1943 Male, age 61, both hemispheres 1158.8
1962 Male, age 76, both hemispheres 1142.7
2138 Female, age 91, both hemispheres 1134.5
2851 Male, age 80, both hemispheres 1111.9
Medial parabrachial nucleus
nTPM: 1097.3
2170 Female, age 91, both hemispheres 1131.5
2463 Female, age 85, right hemisphere 1110.2
2854 Male, age 80, both hemispheres 1106.7
2786 Male, age 76, both hemispheres 1074.4
2156 Male, age 61, both hemispheres 1063.8
Medial periolivary nuclei
nTPM: 1089.6
2063 Male, age 76, both hemispheres 1116.8
2458 Female, age 91, both hemispheres 1097.7
2081 Male, age 80, both hemispheres 1093.6
2171 Female, age 85, both hemispheres 1076.3
2791 Male, age 74, right hemisphere 1063.6
Motor facial nucleus
nTPM: 1087.0
2795 Female, age 91, both hemispheres 1102.7
2126 Male, age 61, both hemispheres 1098.2
2062 Male, age 76, both hemispheres 1093.8
2697 Female, age 85, both hemispheres 1091.1
2365 Male, age 74, right hemisphere 1082.6
2327 Male, age 80, both hemispheres 1053.7
Motor trigeminal nucleus
nTPM: 1085.7
2560 Male, age 74, both hemispheres 1099.7
2321 Female, age 91, both hemispheres 1087.5
2309 Male, age 76, both hemispheres 1087.2
2335 Male, age 61, both hemispheres 1083.9
2079 Male, age 80, both hemispheres 1070.1
Nuclei of the trapezoid body
nTPM: 1085.4
1983 Male, age 76, both hemispheres 1104.7
2166 Male, age 80, both hemispheres 1093.4
2159 Male, age 61, both hemispheres 1084.1
2368 Female, age 91, both hemispheres 1076.5
2735 Female, age 85, both hemispheres 1068.4
Paramedian reticular nucleus
nTPM: 1093.8
2313 Male, age 61, both hemispheres 1111.7
2057 Male, age 80, both hemispheres 1098.7
2052 Male, age 76, both hemispheres 1085.8
2050 Female, age 85, both hemispheres 1078.8
Pontine nuclei
nTPM: 1091.7
2319 Female, age 91, both hemispheres 1101.6
1968 Male, age 76, left hemisphere 1099.4
2454 Male, age 74, left hemisphere 1096.1
2115 Male, age 80, left hemisphere 1094.1
1863 Male, age 55, unknown 1089.6
2787 Female, age 85, both hemispheres 1088.5
2109 Female, age 72, unknown 1088.0
2727 Male, age 61, right hemisphere 1075.9
Pontine raphe nucleus
nTPM: 1077.4
2122 Female, age 85, midline 1079.3
2853 Male, age 76, midline 1075.6
Posteroventral cochlear nucleus
nTPM: 1123.0
2135 Female, age 91, both hemispheres 1152.4
2341 Male, age 80, both hemispheres 1141.0
2371 Male, age 61, both hemispheres 1118.7
2070 Male, age 76, both hemispheres 1104.5
2752 Female, age 85, both hemispheres 1098.5
Principal sensory trigeminal nucleus
nTPM: 1077.0
2367 Female, age 91, left hemisphere 1096.3
2158 Male, age 61, both hemispheres 1096.2
2008 Male, age 80, left hemisphere 1058.3
2324 Male, age 76, both hemispheres 1057.2
Reticular pontine nucleus, caudal
nTPM: 1102.3
2559 Male, age 74, both hemispheres 1116.1
2457 Female, age 91, both hemispheres 1110.6
2092 Male, age 76, both hemispheres 1109.5
2332 Male, age 80, right hemisphere 1073.1
Reticular pontine nucleus, oral
nTPM: 1098.9
2366 Female, age 91, both hemispheres 1113.6
1939 Male, age 80, both hemispheres 1110.9
2361 Male, age 74, both hemispheres 1097.1
2167 Male, age 76, both hemispheres 1092.1
2012 Female, age 85, both hemispheres 1080.6
Reticulotegmental nucleus
nTPM: 1080.0
2452 Male, age 74, both hemispheres 1104.2
2322 Female, age 91, both hemispheres 1093.1
2333 Male, age 80, both hemispheres 1061.8
2325 Male, age 76, both hemispheres 1061.0
Spinal trigeminal nucleus, oral
nTPM: 1076.3
2164 Male, age 80, both hemispheres 1085.1
1978 Male, age 76, both hemispheres 1079.5
2737 Female, age 85, both hemispheres 1064.2
Subcoeruleus area
nTPM: 1089.7
2451 Male, age 74, both hemispheres 1116.8
2369 Female, age 85, left hemisphere 1105.1
1958 Male, age 80, both hemispheres 1089.4
2089 Male, age 76, left hemisphere 1070.9
2323 Female, age 91, left hemisphere 1066.0
Superior olive
nTPM: 1093.5
2020 Male, age 76, both hemispheres 1121.9
2561 Female, age 91, both hemispheres 1116.0
1875 Female, age 85, both hemispheres 1088.4
2364 Male, age 74, right hemisphere 1075.5
2329 Male, age 80, right hemisphere 1065.7
Superior vestibular nucleus
nTPM: 1104.8
2015 Male, age 80, both hemispheres 1121.3
2383 Male, age 74, both hemispheres 1102.8
2061 Male, age 76, both hemispheres 1090.4
Ventral periolivary nuclei
nTPM: 1095.8
2023 Male, age 76, both hemispheres 1121.7
2794 Female, age 91, left hemisphere 1094.1
2130 Female, age 85, both hemispheres 1083.9
2165 Male, age 80, both hemispheres 1083.6
Ventrolateral tegmental area, A5 NE cell group
nTPM: 1087.0
1959 Male, age 76, both hemispheres 1097.4
2456 Female, age 91, both hemispheres 1096.5
2161 Male, age 80, both hemispheres 1093.8
2359 Male, age 61, both hemispheres 1084.6
2840 Female, age 85, both hemispheres 1082.1
2449 Male, age 74, both hemispheres 1067.9

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 384.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 379.5
FF:10165-103B3 76 years, female 410.7
FF:10182-103D2 60 years, female 348.4
Pons
Scaled Tags Per Million: 384.0
FF:10033-101E6 18-54 years, mixed 384.0

PONS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 0.0
Pig sample Sample description nTPM
Pons
nTPM: 0.0
Samples: 4

Max nTPM: 0.1
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.1
Sample C Male 0.0
Sample D Male 0.0

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