MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:1100.3 nTPM
HPA:1100.3 nTPM
GTEx:1272.7 nTPM
FANTOM5:465.6 Scaled Tags Per Million
Pig:0.0 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 1100.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 1083.5
2666 Male, age 74, left hemisphere 1094.7
1870 Female, age 42, unknown 1093.9
1833 Male, age 53, unknown 1092.6
2411 Female, age 72, unknown 1090.8
2828 Female, age 72, unknown 1090.5
1827 Male, age 72, unknown 1084.7
2586 Male, age 75, left hemisphere 1081.9
1830 Male, age 51, unknown 1080.6
2019 Male, age 18, unknown 1074.7
2219 Male, age 76, both hemispheres 1050.5
Dorsal raphe nucleus
nTPM: 1070.2
2750 Male, age 76, both hemispheres 1083.6
2298 Female, age 72, unknown 1081.6
2016 Female, age 72, unknown 1076.6
1828 Male, age 53, unknown 1065.0
2047 Male, age 72, unknown 1044.3
Inferior colliculus
nTPM: 1080.4
2849 Male, age 72, unknown 1093.1
1890 Male, age 53, unknown 1082.4
2097 Female, age 72, unknown 1078.9
1848 Female, age 42, unknown 1067.3
Median raphe nucleus
nTPM: 1067.0
2220 Male, age 76, midline 1067.0
Pedunculopontine tegmental nucleus
nTPM: 1083.1
2334 Male, age 80, both hemispheres 1101.7
1921 Female, age 85, both hemispheres 1075.3
2338 Male, age 61, both hemispheres 1072.3
Periaquaductal grey, anterior
nTPM: 1082.4
2502 Female, age 75, unknown 1097.9
1947 Male, age 18, unknown 1075.9
1795 Male, age 51, unknown 1073.2
Periaquaductal grey, dorsal
nTPM: 1076.1
1831 Male, age 72, unknown 1088.4
1840 Male, age 53, unknown 1083.8
2850 Male, age 76, both hemispheres 1067.1
2464 Female, age 72, unknown 1064.9
Periaquaductal grey, lateral
nTPM: 1071.0
2053 Male, age 18, unknown 1085.7
2140 Male, age 76, both hemispheres 1078.5
2272 Male, age 74, both hemispheres 1048.7
Pretectal area
nTPM: 1071.4
2316 Male, age 76, right hemisphere 1095.4
2825 Male, age 18, unknown 1085.6
1815 Male, age 53, unknown 1081.6
1817 Female, age 42, unknown 1075.9
2007 Male, age 72, unknown 1074.2
1816 Male, age 51, unknown 1068.7
1944 Female, age 72, unknown 1065.3
2407 Male, age 75, both hemispheres 1063.8
2224 Female, age 72, unknown 1061.9
2667 Female, age 75, unknown 1056.5
2273 Male, age 74, both hemispheres 1056.0
Red nucleus
nTPM: 1100.3
2503 Female, age 72, unknown 1132.0
1821 Female, age 72, unknown 1117.4
2584 Male, age 75, left hemisphere 1107.4
2725 Female, age 75, unknown 1106.7
1904 Male, age 53, unknown 1106.0
2588 Male, age 74, left hemisphere 1105.4
1865 Male, age 51, unknown 1104.6
2227 Male, age 72, unknown 1100.9
2769 Male, age 72, unknown 1093.0
1954 Female, age 42, unknown 1082.0
2823 Male, age 76, right hemisphere 1078.9
2785 Male, age 18, unknown 1069.6
Substantia nigra
nTPM: 1094.7
2699 Male, age 18, unknown 1124.4
1851 Male, age 51, unknown 1121.8
2665 Male, age 74, both hemispheres 1109.2
1916 Female, age 42, unknown 1098.9
2590 Female, age 75, unknown 1098.6
2409 Female, age 72, unknown 1097.2
1889 Female, age 72, unknown 1087.7
2583 Male, age 75, right hemisphere 1072.5
1941 Male, age 53, unknown 1070.3
2241 Male, age 72, unknown 1066.1
Superior colliculus
nTPM: 1091.4
2587 Male, age 74, left hemisphere 1138.6
1995 Male, age 72, unknown 1128.1
1913 Female, age 42, unknown 1118.9
1839 Male, age 51, unknown 1087.6
1796 Male, age 53, unknown 1081.3
2668 Female, age 75, unknown 1079.5
1895 Male, age 76, right hemisphere 1076.4
2261 Male, age 18, unknown 1075.4
2087 Female, age 72, unknown 1067.0
2664 Male, age 75, both hemispheres 1060.7
Ventral tegmental area
nTPM: 1091.4
1915 Female, age 42, unknown 1113.3
2223 Female, age 72, unknown 1097.9
2410 Female, age 72, unknown 1095.5
2021 Male, age 53, unknown 1089.2
1942 Male, age 51, unknown 1077.2
2218 Male, age 76, both hemispheres 1075.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1272.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1272.7
Samples: 139

Max nTPM: 2947.8
Min nTPM: 490.2
Std nTPM: 458.9
Median nTPM: 1197.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 2947.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 2873.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2847.0
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 2606.8
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 2293.8
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 2224.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 2173.0
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 2035.5
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 2029.7
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 1973.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 1935.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 465.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 465.6
FF:10158-103A5 76 years, female 465.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 0.0
Pig sample Sample description nTPM
Midbrain
nTPM: 0.0
Samples: 4

Max nTPM: 0.1
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.1
Sample D Male 0.0
Periaqueductal gray
nTPM: 0.0
Samples: 3

Max nTPM: 0.1
Min nTPM: 0.0
Sample B Female 0.0
Sample C Male 0.1
Sample D Male 0.0
Substantia nigra
nTPM: 0.0
Samples: 4

Max nTPM: 0.1
Min nTPM: 0.0
Sample A Female 0.1
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0
Superior colliculi
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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