BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:36.9 nTPM
HPA:36.9 nTPM
GTEx:19.8 nTPM
FANTOM5:61.8 Scaled Tags Per Million
Pig:10.0 nTPM
Mouse:59.2 nTPM
Allen mouse:1.5 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 36.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 13.9
1781 Male, age 74, unknown 30.0
2288 Male, age 75, left hemisphere 20.4
2481 Female, age 94, left hemisphere 14.9
2289 Male, age 61, right hemisphere 12.4
2846 Female, age 79, unknown 12.3
2290 Female, age 72, unknown 8.2
1857 Female, age 85, left hemisphere 6.4
1854 Male, age 80, left hemisphere 6.2
Claustrum
nTPM: 36.9
2292 Female, age 85, both hemispheres 46.8
1956 Male, age 74, unknown 42.6
2284 Female, age 91, both hemispheres 41.0
2568 Male, age 61, both hemispheres 40.8
2198 Male, age 80, both hemispheres 36.0
2491 Male, age 75, both hemispheres 33.0
2392 Female, age 94, both hemispheres 32.3
2645 Female, age 72, unknown 32.2
2196 Female, age 79, unknown 27.4
Globus pallidus, externus
nTPM: 19.9
1996 Male, age 80, right hemisphere 23.0
2772 Female, age 79, unknown 21.7
2395 Male, age 75, both hemispheres 19.7
2646 Male, age 61, right hemisphere 19.0
2567 Female, age 72, unknown 15.9
Globus pallidus, internus
nTPM: 25.5
2111 Female, age 85, right hemisphere 45.1
2778 Female, age 91, both hemispheres 35.2
2287 Male, age 75, right hemisphere 29.4
2037 Male, age 80, right hemisphere 19.5
2566 Female, age 72, unknown 18.1
1818 Male, age 74, unknown 15.9
2483 Female, age 94, right hemisphere 15.1
Nucleus accumbens
nTPM: 13.5
2732 Male, age 80, right hemisphere 20.8
2391 Female, age 94, left hemisphere 15.8
2286 Male, age 75, left hemisphere 14.7
2698 Female, age 72, unknown 14.7
1806 Female, age 85, left hemisphere 12.2
1783 Male, age 74, unknown 11.1
2824 Male, age 61, right hemisphere 10.5
1856 Female, age 91, right hemisphere 7.9
Nucleus basalis of Meynert
nTPM: 16.8
2821 Male, age 75, both hemispheres 22.4
2569 Male, age 61, both hemispheres 18.2
2484 Female, age 94, left hemisphere 13.8
2393 Male, age 80, right hemisphere 12.7
Nucleus of the diagonal band
nTPM: 19.1
1812 Female, age 91, both hemispheres 27.5
2029 Male, age 61, right hemisphere 20.5
2195 Female, age 85, both hemispheres 18.8
2775 Male, age 80, right hemisphere 16.8
1979 Male, age 74, unknown 11.6
Olfactory tubercle
nTPM: 18.6
2487 Female, age 94, left hemisphere 21.6
1998 Female, age 91, both hemispheres 19.4
2856 Male, age 75, right hemisphere 17.9
1846 Male, age 80, right hemisphere 15.3
Putamen
nTPM: 13.3
2647 Male, age 75, left hemisphere 22.8
1829 Male, age 74, unknown 14.6
2466 Female, age 79, unknown 13.4
2482 Female, age 94, left hemisphere 13.1
2489 Female, age 72, unknown 13.1
1937 Female, age 91, right hemisphere 11.2
1838 Male, age 80, right hemisphere 5.1
Septal nuclei
nTPM: 22.3
2394 Male, age 61, left hemisphere 33.3
2009 Female, age 91, both hemispheres 23.1
2031 Female, age 72, unknown 20.9
1960 Male, age 74, unknown 20.7
2629 Female, age 94, right hemisphere 20.3
2059 Female, age 85, both hemispheres 19.2
2199 Male, age 80, right hemisphere 18.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 19.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 15.8
Samples: 246

Max nTPM: 39.8
Min nTPM: 5.7
Std nTPM: 6.2
Median nTPM: 14.6
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 39.8
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 39.0
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 38.3
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 36.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 34.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 34.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 34.2
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 33.6
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 33.3
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 28.6
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 28.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 14.3
Samples: 246

Max nTPM: 88.6
Min nTPM: 5.2
Std nTPM: 9.0
Median nTPM: 11.6
GTEX-14C5O-0011-R6a-SM-5YYB6 60-69 years, male 88.6
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 70.1
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 51.8
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 51.3
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 46.0
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 34.0
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 32.0
GTEX-11GSP-0011-R6b-SM-57WBQ 60-69 years, female 31.7
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 31.5
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 31.0
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 29.5
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Brain - Putamen (basal ganglia)
Average nTPM: 19.8
Samples: 205

Max nTPM: 77.7
Min nTPM: 5.7
Std nTPM: 10.2
Median nTPM: 17.6
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 77.7
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 72.1
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 62.0
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 55.6
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 49.7
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 46.4
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 42.2
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 41.8
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 41.4
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 41.0
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 39.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 61.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 11.9
FF:10164-103B2 76 years, female 11.9
Globus pallidus
Scaled Tags Per Million: 56.8
FF:10175-103C4 60 years, female 77.3
FF:10161-103A8 76 years, female 36.3
Nucleus accumbens
Scaled Tags Per Million: 61.8
FF:10037-101F1 23-56 years, mixed 61.8
Putamen
Scaled Tags Per Million: 28.9
FF:10176-103C5 60 years, female 28.9

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 10.0
Pig sample Sample description nTPM
Caudate
nTPM: 5.8
Samples: 4

Max nTPM: 6.7
Min nTPM: 5.2
Sample A Female 5.6
Sample B Female 6.7
Sample C Male 5.2
Sample D Male 5.7
Putamen
nTPM: 7.5
Samples: 4

Max nTPM: 10.9
Min nTPM: 4.8
Sample A Female 10.9
Sample B Female 4.8
Sample C Male 6.8
Sample D Male 7.6
Septum
nTPM: 10.0
Samples: 4

Max nTPM: 12.8
Min nTPM: 8.3
Sample A Female 8.9
Sample B Female 8.3
Sample C Male 12.8
Sample D Male 10.0
Ventral pallidum
nTPM: 9.2
Samples: 4

Max nTPM: 14.6
Min nTPM: 5.0
Sample A Female 5.0
Sample B Female 7.8
Sample C Male 14.6
Sample D Male 9.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 59.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 46.4
Samples: 4

Max nTPM: 50.9
Min nTPM: 42.8
Sample A Male 50.9
Sample B Male 42.8
Sample C Female 46.1
Sample D Female 45.6
Septum
nTPM: 59.2
Samples: 4

Max nTPM: 66.8
Min nTPM: 54.0
Sample A Male 66.8
Sample B Male 61.1
Sample C Female 54.7
Sample D Female 54.0
Ventral forebrain
nTPM: 54.5
Samples: 4

Max nTPM: 63.3
Min nTPM: 47.0
Sample A Male 53.8
Sample B Male 63.3
Sample C Female 47.0
Sample D Female 54.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.4
69735473 Antisense, RP_050503_02_H07, Mouse strain C57BL/6J (56 days, male) 1.6
75041453 Antisense, RP_060412_04_B07, Mouse strain C57BL/6J (56 days, male) 1.2
Pallidum
Expression energy: 1.5
75041453 Antisense, RP_060412_04_B07, Mouse strain C57BL/6J (56 days, male) 1.6
69735473 Antisense, RP_050503_02_H07, Mouse strain C57BL/6J (56 days, male) 1.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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