HIPPOCAMPAL FORMATION - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:30.2 nTPM
HPA:30.2 nTPM
GTEx:37.0 nTPM
FANTOM5:44.5 Scaled Tags Per Million
Pig:10.4 nTPM
Mouse:55.3 nTPM
Allen mouse:1.9 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 30.2
Sample id Sample description nTPM
Hippocampus
nTPM: 21.8
1911 Female, age 85, right hemisphere 24.8
2621 Female, age 67, right hemisphere 23.3
1898 Male, age 80, left hemisphere 23.1
1855 Male, age 76, left hemisphere 21.4
2148 Female, age 91, left hemisphere 20.2
2529 Female, age 94, left hemisphere 18.2
Dentate gyrus
nTPM: 30.2
2530 Female, age 94, left hemisphere 50.5
2010 Male, age 76, both hemispheres 39.0
2528 Male, age 74, both hemispheres 28.6
1927 Female, age 91, both hemispheres 23.1
2246 Female, age 85, both hemispheres 22.2
2531 Female, age 67, both hemispheres 17.5
Entorhinal gyrus
nTPM: 20.9
2764 Male, age 80, right hemisphere 26.2
1787 Male, age 76, left hemisphere 23.8
2117 Female, age 91, right hemisphere 21.8
1938 Female, age 85, left hemisphere 19.5
2613 Female, age 94, left hemisphere 17.4
2686 Male, age 75, right hemisphere 16.9
Hippocampus, CA1
nTPM: 25.0
1873 Female, age 85, both hemispheres 31.6
2749 Male, age 80, left hemisphere 29.7
2045 Male, age 76, both hemispheres 29.6
2527 Male, age 74, both hemispheres 19.5
2082 Female, age 91, right hemisphere 14.6
Hippocampus, CA2
nTPM: 24.8
2249 Male, age 74, both hemispheres 33.8
1963 Male, age 80, left hemisphere 33.7
2437 Female, age 94, left hemisphere 27.0
1892 Male, age 76, both hemispheres 20.9
1940 Female, age 85, left hemisphere 18.6
2113 Female, age 91, right hemisphere 14.9
Hippocampus, CA3
nTPM: 19.5
1891 Female, age 85, both hemispheres 24.4
2436 Male, age 74, both hemispheres 24.0
1867 Male, age 76, both hemispheres 20.4
2861 Female, age 67, both hemispheres 18.5
2620 Female, age 94, left hemisphere 18.1
2137 Male, age 80, left hemisphere 11.8
Parahippocampal cortex
nTPM: 18.4
1933 Female, age 85, both hemispheres 24.0
2532 Female, age 72, left hemisphere 22.1
1990 Female, age 91, right hemisphere 20.3
2622 Female, age 67, right hemisphere 18.9
2018 Male, age 76, both hemispheres 18.4
2692 Male, age 74, both hemispheres 18.4
2693 Female, age 94, both hemispheres 16.9
1850 Male, age 80, both hemispheres 15.7
2250 Female, age 67, right hemisphere 15.4
2245 Female, age 91, both hemispheres 13.9
Perirhinal gyrus
nTPM: 16.4
2521 Female, age 94, right hemisphere 18.0
2848 Male, age 76, right hemisphere 17.8
1794 Male, age 80, right hemisphere 16.4
1847 Female, age 91, left hemisphere 15.0
1841 Female, age 85, right hemisphere 14.9
Subiculum
nTPM: 23.1
2042 Male, age 76, both hemispheres 34.9
1977 Female, age 85, both hemispheres 27.8
1901 Male, age 80, both hemispheres 22.5
2438 Female, age 94, left hemisphere 19.2
2619 Male, age 74, both hemispheres 18.5
2729 Female, age 91, right hemisphere 15.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 37.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 37.0
Samples: 197

Max nTPM: 165.3
Min nTPM: 11.7
Std nTPM: 21.0
Median nTPM: 31.6
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 165.3
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 126.4
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 125.6
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 93.5
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 87.2
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 85.5
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 84.5
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 84.0
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 78.9
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 77.8
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 75.1
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 44.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 44.5
FF:10169-103B7 60 years, female 46.0
FF:10153-102I9 76 years, female 43.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 10.4
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 10.0
Samples: 4

Max nTPM: 14.0
Min nTPM: 7.2
Sample A Female 14.0
Sample B Female 8.9
Sample C Male 9.8
Sample D Male 7.2
Entorhinal cortex
nTPM: 7.7
Samples: 4

Max nTPM: 8.4
Min nTPM: 6.1
Sample A Female 8.3
Sample B Female 8.4
Sample C Male 7.8
Sample D Male 6.1
Subiculum
nTPM: 9.3
Samples: 4

Max nTPM: 11.8
Min nTPM: 7.4
Sample A Female 11.8
Sample B Female 9.6
Sample C Male 8.5
Sample D Male 7.4
Ventral hippocampus
nTPM: 10.4
Samples: 4

Max nTPM: 12.0
Min nTPM: 8.4
Sample A Female 11.1
Sample B Female 8.4
Sample C Male 12.0
Sample D Male 9.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 55.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 55.4
Samples: 4

Max nTPM: 64.8
Min nTPM: 43.7
Sample A Male 64.8
Sample B Male 62.2
Sample C Female 43.7
Sample D Female 50.7
Hippocampal formation
nTPM: 47.8
Samples: 4

Max nTPM: 54.9
Min nTPM: 43.2
Sample A Male 54.9
Sample B Male 46.8
Sample C Female 43.2
Sample D Female 46.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.9
69735473 Antisense, RP_050503_02_H07, Mouse strain C57BL/6J (56 days, male) 2.1
75041453 Antisense, RP_060412_04_B07, Mouse strain C57BL/6J (56 days, male) 1.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.