MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:46.8 nTPM
HPA:46.8 nTPM
GTEx:47.9 nTPM
FANTOM5:9.3 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 46.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 45.3
2586 Male, age 75, left hemisphere 50.0
1827 Male, age 72, unknown 47.0
1870 Female, age 42, unknown 45.2
2666 Male, age 74, left hemisphere 45.2
2828 Female, age 72, unknown 44.8
2219 Male, age 76, both hemispheres 44.6
1833 Male, age 53, unknown 44.4
2411 Female, age 72, unknown 44.4
1830 Male, age 51, unknown 44.1
2019 Male, age 18, unknown 43.8
Dorsal raphe nucleus
nTPM: 44.6
1828 Male, age 53, unknown 45.9
2047 Male, age 72, unknown 45.7
2750 Male, age 76, both hemispheres 45.0
2016 Female, age 72, unknown 43.3
2298 Female, age 72, unknown 42.9
Inferior colliculus
nTPM: 46.8
2097 Female, age 72, unknown 47.8
1848 Female, age 42, unknown 46.9
1890 Male, age 53, unknown 46.3
2849 Male, age 72, unknown 46.1
Median raphe nucleus
nTPM: 45.0
2220 Male, age 76, midline 45.0
Pedunculopontine tegmental nucleus
nTPM: 45.6
1921 Female, age 85, both hemispheres 48.1
2334 Male, age 80, both hemispheres 47.2
2338 Male, age 61, both hemispheres 41.6
Periaquaductal grey, anterior
nTPM: 45.9
1947 Male, age 18, unknown 46.8
1795 Male, age 51, unknown 46.6
2502 Female, age 75, unknown 44.2
Periaquaductal grey, dorsal
nTPM: 45.0
1831 Male, age 72, unknown 46.4
2850 Male, age 76, both hemispheres 45.7
1840 Male, age 53, unknown 45.0
2464 Female, age 72, unknown 42.8
Periaquaductal grey, lateral
nTPM: 44.9
2053 Male, age 18, unknown 46.5
2272 Male, age 74, both hemispheres 44.1
2140 Male, age 76, both hemispheres 44.0
Pretectal area
nTPM: 46.7
2007 Male, age 72, unknown 50.0
1817 Female, age 42, unknown 49.3
1816 Male, age 51, unknown 48.3
1944 Female, age 72, unknown 47.8
2667 Female, age 75, unknown 46.3
2825 Male, age 18, unknown 46.2
1815 Male, age 53, unknown 45.7
2273 Male, age 74, both hemispheres 45.7
2407 Male, age 75, both hemispheres 45.5
2316 Male, age 76, right hemisphere 44.4
2224 Female, age 72, unknown 44.3
Red nucleus
nTPM: 46.0
1821 Female, age 72, unknown 48.5
2584 Male, age 75, left hemisphere 47.5
1954 Female, age 42, unknown 46.8
2725 Female, age 75, unknown 46.5
2769 Male, age 72, unknown 46.4
1904 Male, age 53, unknown 45.9
2588 Male, age 74, left hemisphere 45.8
2227 Male, age 72, unknown 45.6
2823 Male, age 76, right hemisphere 45.3
1865 Male, age 51, unknown 44.6
2785 Male, age 18, unknown 44.6
2503 Female, age 72, unknown 44.5
Substantia nigra
nTPM: 46.3
1916 Female, age 42, unknown 50.0
2583 Male, age 75, right hemisphere 48.4
1941 Male, age 53, unknown 47.9
1889 Female, age 72, unknown 47.4
2665 Male, age 74, both hemispheres 46.9
2590 Female, age 75, unknown 46.8
1851 Male, age 51, unknown 46.4
2699 Male, age 18, unknown 46.1
2241 Male, age 72, unknown 41.6
2409 Female, age 72, unknown 41.6
Superior colliculus
nTPM: 46.5
2664 Male, age 75, both hemispheres 50.9
1796 Male, age 53, unknown 47.5
2087 Female, age 72, unknown 46.9
2261 Male, age 18, unknown 46.9
2668 Female, age 75, unknown 46.9
1839 Male, age 51, unknown 46.0
1895 Male, age 76, right hemisphere 45.7
1995 Male, age 72, unknown 44.9
1913 Female, age 42, unknown 44.5
2587 Male, age 74, left hemisphere 44.3
Ventral tegmental area
nTPM: 46.1
1915 Female, age 42, unknown 47.6
2410 Female, age 72, unknown 47.0
2218 Male, age 76, both hemispheres 46.9
1942 Male, age 51, unknown 46.2
2223 Female, age 72, unknown 44.7
2021 Male, age 53, unknown 43.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 47.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 47.9
Samples: 139

Max nTPM: 140.3
Min nTPM: 12.4
Std nTPM: 18.4
Median nTPM: 46.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 140.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 98.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 94.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 89.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 88.5
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 84.3
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 80.5
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 79.9
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 79.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 79.0
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 77.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 9.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 9.3
FF:10158-103A5 76 years, female 9.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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