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BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Pons
PONS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:919.2 nTPM
HPA:919.2 nTPM
FANTOM5:52.0 Scaled Tags Per Million

PONS - HPA Brain RNA-seq
Max nTPM 919.2
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 872.5
2301 Female, age 85, both hemispheres 1018.1
2188 Female, age 91, both hemispheres 885.8
2090 Male, age 80, both hemispheres 870.6
1984 Male, age 76, both hemispheres 715.6
Dorsal cochlear nucleus
nTPM: 819.7
2187 Female, age 91, both hemispheres 869.5
2802 Male, age 74, right hemisphere 845.3
2378 Male, age 80, both hemispheres 819.1
2058 Male, age 76, both hemispheres 795.3
2370 Male, age 61, both hemispheres 769.2
Dorsal tegmental nucleus
nTPM: 882.7
2358 Male, age 61, both hemispheres 1016.3
2083 Male, age 80, both hemispheres 886.8
2326 Male, age 74, both hemispheres 849.4
1936 Male, age 76, left hemisphere 778.3
Dorsolateral tegmental area
nTPM: 804.2
2337 Male, age 61, both hemispheres 864.9
2751 Female, age 85, both hemispheres 834.5
2654 Male, age 80, both hemispheres 829.8
2141 Male, age 76, both hemispheres 759.6
2360 Male, age 74, both hemispheres 732.3
Kolliker-Fuse nucleus
nTPM: 881.6
2793 Female, age 91, left hemisphere 974.8
2315 Male, age 76, right hemisphere 837.6
2163 Male, age 80, both hemispheres 832.4
Lateral lemniscal nuclei
nTPM: 802.9
2320 Female, age 91, left hemisphere 874.2
2453 Male, age 74, right hemisphere 845.7
2746 Female, age 85, left hemisphere 822.1
2169 Male, age 76, both hemispheres 778.5
2036 Male, age 80, both hemispheres 694.2
Lateral parabrachial nucleus
nTPM: 829.3
2792 Male, age 76, both hemispheres 963.7
2013 Male, age 80, both hemispheres 854.0
2139 Female, age 85, right hemisphere 775.9
2790 Male, age 61, both hemispheres 723.8
Lateral vestibular nucleus
nTPM: 852.2
2311 Male, age 80, both hemispheres 910.1
2184 Male, age 76, both hemispheres 794.2
Locus coeruleus
nTPM: 719.4
2720 Male, age 74, both hemispheres 810.5
2162 Male, age 80, both hemispheres 744.6
2123 Female, age 91, both hemispheres 711.1
2788 Male, age 74, unknown 696.8
2317 Female, age 72, unknown 696.5
1980 Male, age 76, both hemispheres 693.4
2014 Male, age 55, unknown 683.2
Medial olivary nucleus
nTPM: 919.2
2851 Male, age 80, both hemispheres 978.6
1943 Male, age 61, both hemispheres 936.2
2138 Female, age 91, both hemispheres 896.6
1962 Male, age 76, both hemispheres 865.4
Medial parabrachial nucleus
nTPM: 821.0
2854 Male, age 80, both hemispheres 870.2
2170 Female, age 91, both hemispheres 851.4
2786 Male, age 76, both hemispheres 806.3
2156 Male, age 61, both hemispheres 801.4
2463 Female, age 85, right hemisphere 775.6
Medial periolivary nuclei
nTPM: 797.2
2458 Female, age 91, both hemispheres 880.7
2081 Male, age 80, both hemispheres 872.6
2063 Male, age 76, both hemispheres 756.2
2791 Male, age 74, right hemisphere 746.8
2171 Female, age 85, both hemispheres 729.5
Motor facial nucleus
nTPM: 836.5
2697 Female, age 85, both hemispheres 935.2
2327 Male, age 80, both hemispheres 847.0
2126 Male, age 61, both hemispheres 837.2
2365 Male, age 74, right hemisphere 835.7
2795 Female, age 91, both hemispheres 829.3
2062 Male, age 76, both hemispheres 734.9
Motor trigeminal nucleus
nTPM: 826.2
2321 Female, age 91, both hemispheres 896.5
2335 Male, age 61, both hemispheres 854.3
2309 Male, age 76, both hemispheres 813.0
2079 Male, age 80, both hemispheres 810.5
2560 Male, age 74, both hemispheres 756.9
Nuclei of the trapezoid body
nTPM: 770.0
2166 Male, age 80, both hemispheres 817.2
1983 Male, age 76, both hemispheres 794.8
2368 Female, age 91, both hemispheres 794.0
2159 Male, age 61, both hemispheres 758.6
2735 Female, age 85, both hemispheres 685.1
Paramedian reticular nucleus
nTPM: 798.0
2052 Male, age 76, both hemispheres 817.9
2313 Male, age 61, both hemispheres 809.9
2057 Male, age 80, both hemispheres 791.8
2050 Female, age 85, both hemispheres 772.5
Pontine nuclei
nTPM: 793.4
2319 Female, age 91, both hemispheres 894.8
2454 Male, age 74, left hemisphere 854.4
2115 Male, age 80, left hemisphere 814.5
1968 Male, age 76, left hemisphere 793.8
2109 Female, age 72, unknown 777.0
1863 Male, age 55, unknown 760.1
2787 Female, age 85, both hemispheres 734.2
2727 Male, age 61, right hemisphere 718.3
Pontine raphe nucleus
nTPM: 754.7
2122 Female, age 85, midline 757.9
2853 Male, age 76, midline 751.6
Posteroventral cochlear nucleus
nTPM: 864.5
2341 Male, age 80, both hemispheres 946.2
2135 Female, age 91, both hemispheres 943.1
2070 Male, age 76, both hemispheres 842.9
2371 Male, age 61, both hemispheres 817.6
2752 Female, age 85, both hemispheres 772.9
Principal sensory trigeminal nucleus
nTPM: 810.7
2367 Female, age 91, left hemisphere 950.1
2324 Male, age 76, both hemispheres 864.3
2008 Male, age 80, left hemisphere 714.3
2158 Male, age 61, both hemispheres 714.1
Reticular pontine nucleus, caudal
nTPM: 841.9
2457 Female, age 91, both hemispheres 910.7
2332 Male, age 80, right hemisphere 848.5
2559 Male, age 74, both hemispheres 805.5
2092 Male, age 76, both hemispheres 802.9
Reticular pontine nucleus, oral
nTPM: 837.4
2366 Female, age 91, both hemispheres 978.8
1939 Male, age 80, both hemispheres 845.3
2167 Male, age 76, both hemispheres 836.7
2012 Female, age 85, both hemispheres 765.3
2361 Male, age 74, both hemispheres 760.8
Reticulotegmental nucleus
nTPM: 879.0
2322 Female, age 91, both hemispheres 994.7
2333 Male, age 80, both hemispheres 896.5
2452 Male, age 74, both hemispheres 855.9
2325 Male, age 76, both hemispheres 769.0
Spinal trigeminal nucleus, oral
nTPM: 802.2
2164 Male, age 80, both hemispheres 871.7
1978 Male, age 76, both hemispheres 781.4
2737 Female, age 85, both hemispheres 753.4
Subcoeruleus area
nTPM: 814.6
2369 Female, age 85, left hemisphere 870.4
2323 Female, age 91, left hemisphere 853.3
1958 Male, age 80, both hemispheres 798.5
2451 Male, age 74, both hemispheres 784.2
2089 Male, age 76, left hemisphere 766.8
Superior olive
nTPM: 794.5
2329 Male, age 80, right hemisphere 850.5
2561 Female, age 91, both hemispheres 826.8
2020 Male, age 76, both hemispheres 815.0
2364 Male, age 74, right hemisphere 751.9
1875 Female, age 85, both hemispheres 728.1
Superior vestibular nucleus
nTPM: 803.3
2015 Male, age 80, both hemispheres 825.9
2061 Male, age 76, both hemispheres 795.7
2383 Male, age 74, both hemispheres 788.3
Ventral periolivary nuclei
nTPM: 788.9
2023 Male, age 76, both hemispheres 839.7
2165 Male, age 80, both hemispheres 796.8
2794 Female, age 91, left hemisphere 785.7
2130 Female, age 85, both hemispheres 733.3
Ventrolateral tegmental area, A5 NE cell group
nTPM: 820.2
2840 Female, age 85, both hemispheres 885.5
2161 Male, age 80, both hemispheres 846.1
2456 Female, age 91, both hemispheres 833.6
2449 Male, age 74, both hemispheres 818.7
1959 Male, age 76, both hemispheres 788.6
2359 Male, age 61, both hemispheres 748.5

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 52.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 52.0
FF:10182-103D2 60 years, female 57.7
FF:10165-103B3 76 years, female 46.3
Pons
Scaled Tags Per Million: 41.9
FF:10033-101E6 18-54 years, mixed 41.9

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