We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
PTMA
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • PTMA
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:875.4 nTPM
HPA:875.4 nTPM
GTEx:1274.6 nTPM
FANTOM5:49.2 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 875.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 786.3
2194 Female, age 79, both hemispheres 799.9
1981 Female, age 72, midline 798.4
2048 Male, age 55, midline 792.6
2565 Male, age 75, midline 777.4
2816 Male, age 47, midline 763.1
Cervical spinal cord, dorsal horn
nTPM: 794.3
2296 Male, age 66, both hemispheres 828.9
2173 Female, age 72, unknown 817.2
2297 Male, age 75, both hemispheres 791.6
2069 Male, age 47, both hemispheres 791.5
1877 Male, age 55, unknown 783.9
2721 Male, age 90, both hemispheres 753.1
Cervical spinal cord, ventral horn
nTPM: 875.4
2809 Male, age 90, both hemispheres 946.7
2480 Male, age 75, both hemispheres 907.9
2295 Male, age 66, both hemispheres 906.4
2068 Male, age 55, unknown 862.8
2098 Female, age 72, unknown 836.9
2820 Female, age 79, both hemispheres 791.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1274.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 1274.6
Samples: 159

Max nTPM: 1943.6
Min nTPM: 517.3
Std nTPM: 277.0
Median nTPM: 1264.4
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1943.6
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1852.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1798.3
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 1781.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 1772.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 1762.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 1755.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 1754.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1743.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 1738.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1735.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 1725.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 1712.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1712.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 1707.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 1703.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 1690.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 1676.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 1671.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 1660.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 1639.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 1637.4
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 1631.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 1584.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 1561.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1558.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 1553.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 1542.0
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 1538.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 1537.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 1532.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 1516.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 1512.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 1479.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1473.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 1472.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 1469.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 1467.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 1453.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 1450.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 1450.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 1443.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 1422.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 1418.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 1416.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 1416.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 1408.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 1405.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1404.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 1401.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 1401.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 1394.4
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 1385.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 1385.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 1385.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 1375.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 1375.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 1369.0
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 1364.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 1362.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 1355.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1352.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 1343.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 1341.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 1340.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 1335.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 1317.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1312.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 1309.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 1306.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 1305.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 1296.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 1295.1
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 1292.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 1290.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 1285.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 1280.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 1275.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1269.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 1264.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 1262.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 1260.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 1259.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 1248.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 1246.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 1243.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 1240.8
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 1230.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 1227.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 1224.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 1217.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 1204.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 1201.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 1199.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 1199.7
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 1199.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 1193.2
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 1187.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 1173.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 1171.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 1167.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 1167.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 1147.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 1134.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 1131.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 1126.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 1125.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 1121.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 1120.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 1116.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 1111.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 1107.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 1101.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 1099.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 1092.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 1091.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 1090.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 1082.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 1078.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 1075.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 1073.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 1067.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 1064.2
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 1058.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 1056.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 1046.9
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 1042.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 1037.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 1036.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 1026.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 1006.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 999.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 998.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 996.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 995.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 992.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 988.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 987.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 984.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 971.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 968.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 967.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 960.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 948.8
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 947.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 947.9
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 929.0
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 910.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 908.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 907.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 898.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 894.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 883.5
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 719.5
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 688.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 651.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 633.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 597.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 517.3
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 49.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 49.2
FF:10181-103D1 60 years, female 53.2
FF:10159-103A6 76 years, female 45.3

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.