MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:933.7 nTPM
HPA:933.7 nTPM
GTEx:1021.2 nTPM
FANTOM5:38.5 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 933.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 827.4
1830 Male, age 51, unknown 913.2
1833 Male, age 53, unknown 896.0
1870 Female, age 42, unknown 878.6
2666 Male, age 74, left hemisphere 863.2
2019 Male, age 18, unknown 847.2
2828 Female, age 72, unknown 828.6
2411 Female, age 72, unknown 780.1
1827 Male, age 72, unknown 768.4
2219 Male, age 76, both hemispheres 759.8
2586 Male, age 75, left hemisphere 739.3
Dorsal raphe nucleus
nTPM: 746.7
2750 Male, age 76, both hemispheres 819.1
2016 Female, age 72, unknown 798.4
1828 Male, age 53, unknown 754.5
2298 Female, age 72, unknown 686.3
2047 Male, age 72, unknown 675.2
Inferior colliculus
nTPM: 750.2
2849 Male, age 72, unknown 804.8
1890 Male, age 53, unknown 744.1
1848 Female, age 42, unknown 740.2
2097 Female, age 72, unknown 711.7
Median raphe nucleus
nTPM: 804.1
2220 Male, age 76, midline 804.1
Pedunculopontine tegmental nucleus
nTPM: 845.8
2338 Male, age 61, both hemispheres 899.8
2334 Male, age 80, both hemispheres 889.3
1921 Female, age 85, both hemispheres 748.4
Periaquaductal grey, anterior
nTPM: 765.8
2502 Female, age 75, unknown 817.6
1947 Male, age 18, unknown 759.9
1795 Male, age 51, unknown 719.8
Periaquaductal grey, dorsal
nTPM: 744.9
2850 Male, age 76, both hemispheres 848.6
1831 Male, age 72, unknown 740.8
2464 Female, age 72, unknown 731.8
1840 Male, age 53, unknown 658.3
Periaquaductal grey, lateral
nTPM: 763.1
2140 Male, age 76, both hemispheres 775.5
2272 Male, age 74, both hemispheres 774.1
2053 Male, age 18, unknown 739.8
Pretectal area
nTPM: 750.6
2316 Male, age 76, right hemisphere 821.2
1815 Male, age 53, unknown 812.6
1817 Female, age 42, unknown 780.6
2825 Male, age 18, unknown 777.3
2407 Male, age 75, both hemispheres 772.8
2007 Male, age 72, unknown 737.1
2273 Male, age 74, both hemispheres 734.4
2667 Female, age 75, unknown 719.0
2224 Female, age 72, unknown 717.1
1816 Male, age 51, unknown 692.3
1944 Female, age 72, unknown 692.1
Red nucleus
nTPM: 933.7
2503 Female, age 72, unknown 1044.9
2725 Female, age 75, unknown 999.3
1865 Male, age 51, unknown 978.0
2823 Male, age 76, right hemisphere 955.0
1904 Male, age 53, unknown 954.0
2227 Male, age 72, unknown 944.2
1821 Female, age 72, unknown 944.1
1954 Female, age 42, unknown 931.4
2769 Male, age 72, unknown 914.4
2785 Male, age 18, unknown 884.9
2588 Male, age 74, left hemisphere 861.9
2584 Male, age 75, left hemisphere 791.7
Substantia nigra
nTPM: 749.5
2699 Male, age 18, unknown 849.1
1889 Female, age 72, unknown 772.3
2665 Male, age 74, both hemispheres 759.7
1851 Male, age 51, unknown 756.5
2590 Female, age 75, unknown 737.1
1916 Female, age 42, unknown 735.9
1941 Male, age 53, unknown 728.7
2409 Female, age 72, unknown 724.6
2583 Male, age 75, right hemisphere 716.1
2241 Male, age 72, unknown 715.2
Superior colliculus
nTPM: 788.9
1913 Female, age 42, unknown 946.5
1995 Male, age 72, unknown 932.6
1839 Male, age 51, unknown 806.0
2587 Male, age 74, left hemisphere 804.9
1895 Male, age 76, right hemisphere 779.6
1796 Male, age 53, unknown 763.9
2668 Female, age 75, unknown 731.4
2664 Male, age 75, both hemispheres 712.7
2087 Female, age 72, unknown 710.3
2261 Male, age 18, unknown 701.1
Ventral tegmental area
nTPM: 769.8
2223 Female, age 72, unknown 832.5
2218 Male, age 76, both hemispheres 783.0
1915 Female, age 42, unknown 766.8
2021 Male, age 53, unknown 761.8
1942 Male, age 51, unknown 749.5
2410 Female, age 72, unknown 725.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1021.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1021.2
Samples: 139

Max nTPM: 2258.9
Min nTPM: 418.8
Std nTPM: 323.6
Median nTPM: 973.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2258.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 1913.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 1852.6
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 1791.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 1737.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 1701.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1668.8
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 1659.9
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 1639.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 1635.6
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 1562.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 38.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 38.5
FF:10158-103A5 76 years, female 38.5

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