MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:24.4 nTPM
HPA:24.4 nTPM
GTEx:25.1 nTPM
FANTOM5:31.7 Scaled Tags Per Million
Pig:4.9 nTPM
Mouse:3.5 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 24.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 22.4
2586 Male, age 75, left hemisphere 29.5
2019 Male, age 18, unknown 23.3
2411 Female, age 72, unknown 23.0
1833 Male, age 53, unknown 22.6
1830 Male, age 51, unknown 21.7
1827 Male, age 72, unknown 21.6
2828 Female, age 72, unknown 21.5
1870 Female, age 42, unknown 20.7
2219 Male, age 76, both hemispheres 20.3
2666 Male, age 74, left hemisphere 20.1
Dorsal raphe nucleus
nTPM: 21.1
2016 Female, age 72, unknown 22.1
1828 Male, age 53, unknown 21.9
2047 Male, age 72, unknown 21.6
2750 Male, age 76, both hemispheres 20.0
2298 Female, age 72, unknown 19.7
Inferior colliculus
nTPM: 23.0
1848 Female, age 42, unknown 24.5
2849 Male, age 72, unknown 24.0
2097 Female, age 72, unknown 22.9
1890 Male, age 53, unknown 20.7
Median raphe nucleus
nTPM: 15.4
2220 Male, age 76, midline 15.4
Pedunculopontine tegmental nucleus
nTPM: 18.4
1921 Female, age 85, both hemispheres 19.9
2334 Male, age 80, both hemispheres 19.8
2338 Male, age 61, both hemispheres 15.5
Periaquaductal grey, anterior
nTPM: 22.1
2502 Female, age 75, unknown 27.2
1795 Male, age 51, unknown 19.8
1947 Male, age 18, unknown 19.3
Periaquaductal grey, dorsal
nTPM: 20.1
2464 Female, age 72, unknown 24.7
1840 Male, age 53, unknown 23.4
1831 Male, age 72, unknown 16.8
2850 Male, age 76, both hemispheres 15.4
Periaquaductal grey, lateral
nTPM: 18.1
2053 Male, age 18, unknown 20.0
2272 Male, age 74, both hemispheres 18.2
2140 Male, age 76, both hemispheres 16.0
Pretectal area
nTPM: 21.6
1817 Female, age 42, unknown 25.1
2407 Male, age 75, both hemispheres 23.3
2007 Male, age 72, unknown 22.5
1815 Male, age 53, unknown 22.1
2667 Female, age 75, unknown 21.9
1944 Female, age 72, unknown 21.1
1816 Male, age 51, unknown 20.9
2316 Male, age 76, right hemisphere 20.7
2825 Male, age 18, unknown 20.5
2273 Male, age 74, both hemispheres 20.2
2224 Female, age 72, unknown 19.2
Red nucleus
nTPM: 24.4
2823 Male, age 76, right hemisphere 28.4
1904 Male, age 53, unknown 27.0
2503 Female, age 72, unknown 26.2
1821 Female, age 72, unknown 25.7
1954 Female, age 42, unknown 25.7
2769 Male, age 72, unknown 25.6
2227 Male, age 72, unknown 25.3
1865 Male, age 51, unknown 25.0
2785 Male, age 18, unknown 23.5
2588 Male, age 74, left hemisphere 23.0
2725 Female, age 75, unknown 18.9
2584 Male, age 75, left hemisphere 18.0
Substantia nigra
nTPM: 20.3
2699 Male, age 18, unknown 21.9
2583 Male, age 75, right hemisphere 21.5
1889 Female, age 72, unknown 21.4
2409 Female, age 72, unknown 21.3
1916 Female, age 42, unknown 20.9
2590 Female, age 75, unknown 20.4
1851 Male, age 51, unknown 20.2
2241 Male, age 72, unknown 19.7
2665 Male, age 74, both hemispheres 18.6
1941 Male, age 53, unknown 17.2
Superior colliculus
nTPM: 22.3
2664 Male, age 75, both hemispheres 29.8
1839 Male, age 51, unknown 23.3
1895 Male, age 76, right hemisphere 22.9
2668 Female, age 75, unknown 22.2
1995 Male, age 72, unknown 21.9
2587 Male, age 74, left hemisphere 21.1
1796 Male, age 53, unknown 21.0
2261 Male, age 18, unknown 20.9
2087 Female, age 72, unknown 20.6
1913 Female, age 42, unknown 19.2
Ventral tegmental area
nTPM: 19.2
2410 Female, age 72, unknown 24.9
1915 Female, age 42, unknown 20.0
1942 Male, age 51, unknown 19.7
2021 Male, age 53, unknown 18.0
2223 Female, age 72, unknown 16.8
2218 Male, age 76, both hemispheres 15.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 25.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 25.1
Samples: 139

Max nTPM: 64.7
Min nTPM: 4.7
Std nTPM: 11.9
Median nTPM: 23.4
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 64.7
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 57.4
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 53.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 52.6
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 51.4
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 48.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 48.1
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 47.0
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 46.7
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 46.6
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 45.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 31.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 31.7
FF:10158-103A5 76 years, female 31.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 4.9
Pig sample Sample description nTPM
Midbrain
nTPM: 3.7
Samples: 4

Max nTPM: 5.2
Min nTPM: 1.9
Sample A Female 1.9
Sample B Female 5.2
Sample C Male 4.4
Sample D Male 3.3
Periaqueductal gray
nTPM: 5.0
Samples: 3

Max nTPM: 5.8
Min nTPM: 4.5
Sample B Female 5.8
Sample C Male 4.6
Sample D Male 4.5
Substantia nigra
nTPM: 3.5
Samples: 4

Max nTPM: 3.8
Min nTPM: 2.8
Sample A Female 2.8
Sample B Female 3.8
Sample C Male 3.8
Sample D Male 3.5
Superior colliculi
nTPM: 3.0
Samples: 4

Max nTPM: 4.2
Min nTPM: 2.1
Sample A Female 2.1
Sample B Female 2.1
Sample C Male 4.2
Sample D Male 3.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 3.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 3.5
Samples: 4

Max nTPM: 3.9
Min nTPM: 2.9
Sample A Male 3.8
Sample B Male 3.9
Sample C Female 2.9
Sample D Female 3.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
73636086 Antisense, RP_050913_03_G07, Mouse strain C57BL/6J (56 days, male) 0.1
71495897 Antisense, RP_050913_03_G07, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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